Miyakogusa Predicted Gene

Lj1g3v1363170.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1363170.1 tr|B6SIZ7|B6SIZ7_MAIZE Trafficking protein
particle complex protein 2 OS=Zea mays PE=4
SV=1,60.98,3e-18,Sedlin_N,Sedlin; no description,NULL; MBP-1
INTERACTING PROTEIN-2A,NULL; MBP-1 INTERACTING PROTEIN-2,CUFF.27180.1
         (87 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G80500.1 | Symbols:  | SNARE-like superfamily protein | chr1:...   151   7e-38

>AT1G80500.1 | Symbols:  | SNARE-like superfamily protein |
          chr1:30271195-30272431 FORWARD LENGTH=135
          Length = 135

 Score =  151 bits (382), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 73/81 (90%), Positives = 75/81 (92%)

Query: 1  MATTACFIIVSRNDIPIYEAEVGVAAKREDAAQLHQFILHAALDVVQDLAWTTSAMYLKS 60
          MA TACFIIV RNDIPIYEAEVG AAKREDAAQLHQFILHAALDVVQDLAWTTSAM+LKS
Sbjct: 1  MANTACFIIVGRNDIPIYEAEVGSAAKREDAAQLHQFILHAALDVVQDLAWTTSAMFLKS 60

Query: 61 VDRFNELVVSVYVTAGHILYM 81
          VDRFN+LVVSVYVTAGH   M
Sbjct: 61 VDRFNDLVVSVYVTAGHTRLM 81