Miyakogusa Predicted Gene

Lj1g3v1362060.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1362060.1 Non Chatacterized Hit- tr|G7JC78|G7JC78_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,68.35,6e-19,seg,NULL,CUFF.27166.1
         (181 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G27990.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   172   9e-44
AT5G52420.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    66   1e-11
AT5G23920.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    59   1e-09

>AT1G27990.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G52420.1); Has 86 Blast hits to 86 proteins in
           15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 2
           (source: NCBI BLink). | chr1:9752799-9753919 REVERSE
           LENGTH=271
          Length = 271

 Score =  172 bits (437), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 90/122 (73%), Positives = 101/122 (82%), Gaps = 2/122 (1%)

Query: 56  RVIELQLVAFILVFSASGLVPLFDLIFPALASAYILALSRFXXXXXXXXXXXXXXEVFKG 115
           RVIELQLVAFILVFSASGLVP+ D++FPA AS YI+ALSR               EVF+G
Sbjct: 44  RVIELQLVAFILVFSASGLVPILDMLFPAFASIYIIALSRLAFPSHGVSTASP--EVFRG 101

Query: 116 SRLFRMYVVVGTTVGLFLPLAYVLGGFARGDEHAVRSATPHLFLLSFQILTENIISELSL 175
           S+LFR+YV+ GTT+GLFLPLAYVLGGFARGD+HAVRSATPHLFLLS QILTEN+IS LSL
Sbjct: 102 SKLFRLYVISGTTIGLFLPLAYVLGGFARGDDHAVRSATPHLFLLSCQILTENVISGLSL 161

Query: 176 FS 177
           FS
Sbjct: 162 FS 163


>AT5G52420.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endoplasmic
           reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED
           DURING: 13 growth stages; BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT5G23920.1);
           Has 30201 Blast hits to 17322 proteins in 780 species:
           Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
           3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
           2996 (source: NCBI BLink). | chr5:21281817-21282545
           FORWARD LENGTH=242
          Length = 242

 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 66/140 (47%), Gaps = 8/140 (5%)

Query: 37  PKQQKEHQPTPL-------GGMMGSLRVIELQLVAFILVFSASGLVPLFDLIFPALASAY 89
           PK+++E   T         G   G     +L ++A I+V SASGLV + D IF  L   Y
Sbjct: 15  PKEEEEEHQTQSTSTVSSTGKPAGFFSFRQLNILAIIIVLSASGLVTIQDFIFTILTLIY 74

Query: 90  ILALSRFXXXXXXXXXXXXXXEVFKGSRLFRMYVVVGTTVGLFLPLAYVLGGFARGDEHA 149
              LS+                    +++FR+YV     VGL +P+ Y+  G    D++ 
Sbjct: 75  FFFLSKLIFPPHNNPNRDAPLTS-STNKIFRIYVTAAGIVGLIIPICYIFEGIVEDDKNG 133

Query: 150 VRSATPHLFLLSFQILTENI 169
           V +A PH+FLL+ QI  E +
Sbjct: 134 VSAAAPHVFLLASQIFMEGL 153


>AT5G23920.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: plasma membrane,
           vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED
           DURING: 13 growth stages; BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT5G52420.1);
           Has 1807 Blast hits to 1807 proteins in 277 species:
           Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347;
           Plants - 385; Viruses - 0; Other Eukaryotes - 339
           (source: NCBI BLink). | chr5:8073363-8074118 REVERSE
           LENGTH=229
          Length = 229

 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 3/115 (2%)

Query: 56  RVIELQLVAFILVFSASGLVPLFDLIFPALASAYILA-LSRFXXXXXXXXXXXXXXEVFK 114
           R  +L  ++F+++ +A GLV + ++ F  L   Y+   LSRF                  
Sbjct: 29  RKRQLVFLSFMILLAAKGLVGIGEIAFVILCYIYLYEFLSRFAFPRKQTEQKKRLSN--P 86

Query: 115 GSRLFRMYVVVGTTVGLFLPLAYVLGGFARGDEHAVRSATPHLFLLSFQILTENI 169
            ++LF+ Y +    +GL  PL Y+  G  RGD H   +A PHLFLLS Q  TE I
Sbjct: 87  KNKLFQAYFLATAIIGLLFPLCYIGDGIYRGDIHGAGAAAPHLFLLSGQAFTEPI 141