Miyakogusa Predicted Gene

Lj1g3v1362050.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1362050.1 Non Chatacterized Hit- tr|A5BC59|A5BC59_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,72.58,3e-18,
,CUFF.27165.1
         (81 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G27990.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    81   1e-16
AT5G52420.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    46   5e-06

>AT1G27990.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G52420.1); Has 86 Blast hits to 86 proteins in
           15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 2
           (source: NCBI BLink). | chr1:9752799-9753919 REVERSE
           LENGTH=271
          Length = 271

 Score = 80.9 bits (198), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/63 (60%), Positives = 46/63 (73%), Gaps = 1/63 (1%)

Query: 13  MAWHWFGKGLAVVNLAYFSINLFGFLIPRFLPRAFERYFQERGEIYAKTAEDKRF-VSSN 71
           + W WFG+ LA+ NL YF +NL  FLIPRFLPRAFE+YF+ER EI AK+ EDK   V  +
Sbjct: 204 VTWFWFGRYLALANLGYFGVNLLCFLIPRFLPRAFEQYFRERDEILAKSQEDKPVQVPRS 263

Query: 72  KPQ 74
           KP 
Sbjct: 264 KPS 266


>AT5G52420.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endoplasmic
           reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED
           DURING: 13 growth stages; BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT5G23920.1);
           Has 30201 Blast hits to 17322 proteins in 780 species:
           Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
           3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
           2996 (source: NCBI BLink). | chr5:21281817-21282545
           FORWARD LENGTH=242
          Length = 242

 Score = 45.8 bits (107), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 27/40 (67%)

Query: 17  WFGKGLAVVNLAYFSINLFGFLIPRFLPRAFERYFQERGE 56
           + GK LA  NL  +S NLFG LIP +LPRAF+RY+    E
Sbjct: 202 YAGKVLAAANLGIWSFNLFGVLIPVYLPRAFKRYYGSDKE 241