Miyakogusa Predicted Gene

Lj1g3v1355740.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1355740.1 tr|B8PJK2|B8PJK2_POSPM Predicted protein
OS=Postia placenta (strain ATCC 44394 / Madison 698-R)
GN=P,30.43,0.00003,F-box,F-box domain, cyclin-like; SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,NULL; A Receptor for Ubi,CUFF.27264.1
         (293 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G39450.1 | Symbols:  | F-box family protein | chr5:15786045-1...   271   6e-73
AT5G39460.1 | Symbols:  | F-box family protein | chr5:15788289-1...   258   4e-69
AT5G39480.1 | Symbols:  | F-box family protein | chr5:15801635-1...   253   7e-68
AT5G39490.1 | Symbols:  | F-box family protein | chr5:15805808-1...   252   2e-67
AT5G39470.1 | Symbols:  | F-box family protein | chr5:15791952-1...    77   2e-14

>AT5G39450.1 | Symbols:  | F-box family protein |
           chr5:15786045-15787877 FORWARD LENGTH=579
          Length = 579

 Score =  271 bits (692), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 142/285 (49%), Positives = 189/285 (66%), Gaps = 34/285 (11%)

Query: 11  LLFLPDDVFAIVSQFLSPRDVCNLALCCKSLNTLVASEKIWLTQCEVLGIVPHKDLVEWR 70
           LL LP+DV A++++F+SPRD+CNL+LCCKSL  +V SE+IWL QCEV+ ++P  ++++WR
Sbjct: 19  LLSLPEDVIAVIARFVSPRDICNLSLCCKSLCDVVDSERIWLVQCEVVKVLPLSEIIQWR 78

Query: 71  KGVLSYKALCRFLLSV-QPLIGIWVHQNPELGNVVYVMPGFVSVVGCRIIPQELGPLGVE 129
            G+ SYKALC FL  V +PL+G+WVHQNPELGNVVYVMPGF+SVVGCRIIPQE+GPLG+E
Sbjct: 79  IGISSYKALCWFLGEVMKPLVGVWVHQNPELGNVVYVMPGFLSVVGCRIIPQEVGPLGIE 138

Query: 130 DGPILWASVFEVICDFDGSTMFFLHGREKGVD-YVYPGSVESIDRSCNVLLLEVEPSGHK 188
           +  ++W+ VFE+IC FDGS  FFLHGR+  V   ++PG V  I++SCNVLLLEVE    K
Sbjct: 139 EARVMWSPVFEIICGFDGSAKFFLHGRDGKVQCCLHPGFVRGIEKSCNVLLLEVETRREK 198

Query: 189 KVSSLLQSKSFAHQSGVEVSAKVCRSSSDISGSKRVGGNSEATVTFSKLAFFDRRRLLEV 248
           K+ + +       ++GV++                          F KL F  RR LL +
Sbjct: 199 KLCNEIDETVLLVETGVQLP-------------------------FRKLPFSYRRNLLHI 233

Query: 249 TTSNVRKTVPDKVTGPLFPRLRDDEENFQKDLVLLWERRSSLCQM 293
            TS V   VPD  +  LFP  +DDE        +L ERR+ L +M
Sbjct: 234 VTSTVGIPVPDLSSEKLFPTSKDDE-------AVLLERRTMLLKM 271


>AT5G39460.1 | Symbols:  | F-box family protein |
           chr5:15788289-15790004 REVERSE LENGTH=571
          Length = 571

 Score =  258 bits (658), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 141/295 (47%), Positives = 184/295 (62%), Gaps = 41/295 (13%)

Query: 1   MLPEPCDSSTLLFLPDDVFAIVSQFLSPRDVCNLALCCKSLNTLVASEKIWLTQCEVLGI 60
           M  E   +  LL LP+DVFA++S+FLSP D+CNL LC KSL  LV SEK WL QCE + +
Sbjct: 2   MNKESFGACLLLTLPEDVFAVISRFLSPSDICNLILCGKSLCALVDSEKTWLVQCEEVKV 61

Query: 61  VPHKDLVEWRKGVLSYKALCRFLLSV-QPLIGIWVHQNPELGNVVYVMPGFVSVVGCRII 119
           +P  +LV+WR G+ SYKALCRFL+ V +PL+GIWV +NPELGNVVYVMPGF+SVVGCRII
Sbjct: 62  LPLIELVQWRIGISSYKALCRFLVEVVKPLLGIWVQENPELGNVVYVMPGFLSVVGCRII 121

Query: 120 PQELGPLGVEDGPILWASVFEVICDFDGSTMFFLHGREKGVDYVYPGSVESIDRSCNVLL 179
           PQ++ PL +++G + W+ VFE+IC FDGS  FFLHGR+K   ++YPG V  I++SCNVLL
Sbjct: 122 PQKVAPLWIQEGQVKWSPVFEIICGFDGSKGFFLHGRDKQGSFLYPGFVMDIEKSCNVLL 181

Query: 180 LEVEPSGHKKVSSLLQSKSFAHQSGVEVSAKVCRSSSDISGSKRVGGNSEATVTFSKLAF 239
           LEVEP   K   + ++                                 E    F  L F
Sbjct: 182 LEVEPRSEKSSCNEIE--------------------------------REVGDPFGDLDF 209

Query: 240 FDRRRLLEVTTSNVRKTVPDKVTGPLFP-RLRDDEENFQKDLVLLWERRSSLCQM 293
            DR  LL++ T +V   V + +TG LFP R + DE        ++ ERR+ L +M
Sbjct: 210 SDRMNLLDIVTKHVSLRVDEPLTGNLFPTRSKYDE-------AMMLERRNMLLKM 257


>AT5G39480.1 | Symbols:  | F-box family protein |
           chr5:15801635-15803341 REVERSE LENGTH=568
          Length = 568

 Score =  253 bits (647), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 138/294 (46%), Positives = 182/294 (61%), Gaps = 35/294 (11%)

Query: 1   MLPEPCDSSTLLFLPDDVFAIVSQFLSPRDVCNLALCCKSLNTLVASEKIWLTQCEVLGI 60
           M  E   +  LL LP+DVFA++S+FLSP D+CNL LC KSL  LV +EK+WL QCE + +
Sbjct: 2   MNKESFGACLLLTLPEDVFAVISRFLSPSDICNLILCGKSLPALVDTEKMWLVQCEEVKV 61

Query: 61  VPHKDLVEWRKGVLSYKALCRFLLSV-QPLIGIWVHQNPELGNVVYVMPGFVSVVGCRII 119
           +P  ++V+WR G+ SYKALCRFL+ V +PL+GIWV QNPELGNVVYVMPGF+SVVGCRII
Sbjct: 62  LPLLEIVQWRIGISSYKALCRFLVEVVKPLLGIWVQQNPELGNVVYVMPGFLSVVGCRII 121

Query: 120 PQELGPLGVEDGPILWASVFEVICDFDGSTMFFLHGREKGVDYVYPGSVESIDRSCNVLL 179
           PQ++ P  +++  + W+ VFE+IC FDGS  FFLHGR+K    +YPG V  I++SCNVL 
Sbjct: 122 PQKVAPSWIQEDRVKWSPVFEIICGFDGSNGFFLHGRDKEGSCLYPGFVMGIEKSCNVLQ 181

Query: 180 LEVEPSGHKKVSSLLQSKSFAHQSGVEVSAKVCRSSSDISGSKRVGGNSEATVTFSKLAF 239
           L+V P   K                           S  +  +R     E  + F  LAF
Sbjct: 182 LDVVPRQEK---------------------------SSCNEIERGASREEGEIPFWMLAF 214

Query: 240 FDRRRLLEVTTSNVRKTVPDKVTGPLFPRLRDDEENFQKDLVLLWERRSSLCQM 293
            DR+ LL + TS+V   V + +   LFP L+ DE        +L ERR+ L +M
Sbjct: 215 SDRKNLLNIVTSHVSLHVVEPLNEMLFPTLKYDE-------AMLVERRTILLKM 261


>AT5G39490.1 | Symbols:  | F-box family protein |
           chr5:15805808-15807508 REVERSE LENGTH=566
          Length = 566

 Score =  252 bits (643), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 138/284 (48%), Positives = 182/284 (64%), Gaps = 35/284 (12%)

Query: 11  LLFLPDDVFAIVSQFLSPRDVCNLALCCKSLNTLVASEKIWLTQCEVLGIVPHKDLVEWR 70
           LL LP+D+F ++S+FLSP D+CNL LC KSL  LV SEK WL QCE + ++P  ++V+WR
Sbjct: 11  LLMLPEDIFVVISRFLSPSDICNLILCGKSLRALVDSEKTWLVQCEEVKVLPLLEIVQWR 70

Query: 71  KGVLSYKALCRFLLSV-QPLIGIWVHQNPELGNVVYVMPGFVSVVGCRIIPQELGPLGVE 129
            G+ SYKALCRFL+ V +PL+GIWV QNPELGNVVYVMPGF+SVVGCRIIPQ++ P  ++
Sbjct: 71  IGISSYKALCRFLVEVVKPLLGIWVQQNPELGNVVYVMPGFLSVVGCRIIPQKVAPSWIQ 130

Query: 130 DGPILWASVFEVICDFDGSTMFFLHGREKGVDYVYPGSVESIDRSCNVLLLEVEPSGHKK 189
           +  + W+ VFE+IC FDGS  FFLHGR+K    +YPG V  I+++C+VL LEV P     
Sbjct: 131 EDRVKWSPVFEIICGFDGSNGFFLHGRDKEGSCLYPGFVMGIEKNCDVLQLEVVPR---- 186

Query: 190 VSSLLQSKSFAHQSGVEVSAKVCRSSSDISGSKRVGGNSEATVTFSKLAFFDRRRLLEVT 249
                Q KS               S ++I   +R     E  + F  LAF DR+ LL + 
Sbjct: 187 -----QEKS---------------SCNEI---ERGASRKEGEIPFWMLAFSDRKHLLNIV 223

Query: 250 TSNVRKTVPDKVTGPLFPRLRDDEENFQKDLVLLWERRSSLCQM 293
           T++V   V + +   LFP L+DDE       V L ERR+ L +M
Sbjct: 224 TNHVGLHVVEPLNEMLFPTLKDDE-------VKLNERRTILLKM 260


>AT5G39470.1 | Symbols:  | F-box family protein |
           chr5:15791952-15793062 REVERSE LENGTH=170
          Length = 170

 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 52/91 (57%), Gaps = 25/91 (27%)

Query: 11  LLFLPDDVFAIVSQFLSPRDVCNLALCCKSLNTLVASEKIWLTQCEVLGIVPHKDLVEWR 70
           LL LP+DVF+++S FLSP D+C++  CCKSL  LV SEK WL Q EV+ +          
Sbjct: 96  LLTLPEDVFSVISHFLSPSDICDIIFCCKSLCALVDSEKTWLVQYEVVKV---------- 145

Query: 71  KGVLSYKALCRFLLSVQPLIGIWVHQNPELG 101
                          V+PL+GIWV +NP +G
Sbjct: 146 ---------------VKPLVGIWVQKNPVIG 161