Miyakogusa Predicted Gene

Lj1g3v1353700.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1353700.1 tr|I1JXZ9|I1JXZ9_SOYBN DNA polymerase OS=Glycine
max PE=3 SV=1,91.62,0,DNA POLYMERASE DELTA CATALYTIC SUBUNIT,NULL; DNA
POLYMERASE CATALYTIC SUBUNIT,NULL; DNA/RNA polymera,CUFF.27148.1
         (358 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G63960.1 | Symbols: EMB2780 | DNA binding;nucleotide binding;...   634   0.0  
AT5G63960.2 | Symbols: EMB2780 | DNA binding;nucleotide binding;...   634   0.0  
AT1G67500.2 | Symbols: REV3 | recovery protein 3 | chr1:25287707...   146   2e-35
AT1G67500.1 | Symbols: ATREV3, REV3 | recovery protein 3 | chr1:...   146   3e-35
AT5G67100.1 | Symbols: ICU2 | DNA-directed DNA polymerases | chr...    89   3e-18

>AT5G63960.1 | Symbols: EMB2780 | DNA binding;nucleotide
            binding;nucleic acid binding;DNA-directed DNA
            polymerases;DNA-directed DNA polymerases |
            chr5:25599597-25606672 FORWARD LENGTH=1095
          Length = 1095

 Score =  634 bits (1635), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 300/358 (83%), Positives = 327/358 (91%), Gaps = 2/358 (0%)

Query: 1    MIEHTKKLVEDKFTMLNGYGHTAEVIYGDTDSVMVQFGVSSVEEAMKLGREAAEYISGTF 60
            MIE TKKLVEDKFT L GY + AEVIYGDTDSVMVQFGVS VE AM LGREAAE+ISGTF
Sbjct: 725  MIEQTKKLVEDKFTTLGGYQYNAEVIYGDTDSVMVQFGVSDVEAAMTLGREAAEHISGTF 784

Query: 61   IQPIKLEFEKVYFPYLLISKKRYAGLFWTKPDKFDKMDAKGIETVRRDNCLLVKNLVNDC 120
            I+PIKLEFEKVYFPYLLI+KKRYAGL WT P +FDKMD KGIETVRRDNCLLVKNLV + 
Sbjct: 785  IKPIKLEFEKVYFPYLLINKKRYAGLLWTNPQQFDKMDTKGIETVRRDNCLLVKNLVTES 844

Query: 121  LHKILIDRDIPGAVQYVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERM 180
            L+KILIDRD+PGA + VK  ISDLLMNR+DLSLLVITKGLTKTGDDYEVK+AH ELAERM
Sbjct: 845  LNKILIDRDVPGAAENVKKTISDLLMNRIDLSLLVITKGLTKTGDDYEVKSAHGELAERM 904

Query: 181  RKRDAATAPNVGDRVPYVIIKAAKGAKNYEKSEDPIFVLENNIPIDPHYYLENQISKPIL 240
            RKRDAATAPNVGDRVPYVIIKAAKGAK YE+SEDPI+VL+NNIPIDP+YYLENQISKP+L
Sbjct: 905  RKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLQNNIPIDPNYYLENQISKPLL 964

Query: 241  RIFEPILKNASNELLHGSHTRSISISTPTNGGIMKFAKKQLTCIGCKALLSNGNHTLCSH 300
            RIFEP+LKNAS ELLHGSHTRSISI+TP+N GIMKFAKKQL+C+GCK  +SNG  TLC+ 
Sbjct: 965  RIFEPVLKNASKELLHGSHTRSISITTPSNSGIMKFAKKQLSCVGCKVPISNG--TLCAS 1022

Query: 301  CKGREPELYCKTVAQVSDLEMLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQ 358
            CKGRE ELYCK V+QV++LE +FGRLWTQCQECQGSLHQDVLCTSRDCPIFYRR KAQ
Sbjct: 1023 CKGREAELYCKNVSQVAELEEVFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRMKAQ 1080


>AT5G63960.2 | Symbols: EMB2780 | DNA binding;nucleotide
            binding;nucleic acid binding;DNA-directed DNA
            polymerases;DNA-directed DNA polymerases |
            chr5:25599597-25606672 FORWARD LENGTH=1112
          Length = 1112

 Score =  634 bits (1634), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 300/358 (83%), Positives = 327/358 (91%), Gaps = 2/358 (0%)

Query: 1    MIEHTKKLVEDKFTMLNGYGHTAEVIYGDTDSVMVQFGVSSVEEAMKLGREAAEYISGTF 60
            MIE TKKLVEDKFT L GY + AEVIYGDTDSVMVQFGVS VE AM LGREAAE+ISGTF
Sbjct: 742  MIEQTKKLVEDKFTTLGGYQYNAEVIYGDTDSVMVQFGVSDVEAAMTLGREAAEHISGTF 801

Query: 61   IQPIKLEFEKVYFPYLLISKKRYAGLFWTKPDKFDKMDAKGIETVRRDNCLLVKNLVNDC 120
            I+PIKLEFEKVYFPYLLI+KKRYAGL WT P +FDKMD KGIETVRRDNCLLVKNLV + 
Sbjct: 802  IKPIKLEFEKVYFPYLLINKKRYAGLLWTNPQQFDKMDTKGIETVRRDNCLLVKNLVTES 861

Query: 121  LHKILIDRDIPGAVQYVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERM 180
            L+KILIDRD+PGA + VK  ISDLLMNR+DLSLLVITKGLTKTGDDYEVK+AH ELAERM
Sbjct: 862  LNKILIDRDVPGAAENVKKTISDLLMNRIDLSLLVITKGLTKTGDDYEVKSAHGELAERM 921

Query: 181  RKRDAATAPNVGDRVPYVIIKAAKGAKNYEKSEDPIFVLENNIPIDPHYYLENQISKPIL 240
            RKRDAATAPNVGDRVPYVIIKAAKGAK YE+SEDPI+VL+NNIPIDP+YYLENQISKP+L
Sbjct: 922  RKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLQNNIPIDPNYYLENQISKPLL 981

Query: 241  RIFEPILKNASNELLHGSHTRSISISTPTNGGIMKFAKKQLTCIGCKALLSNGNHTLCSH 300
            RIFEP+LKNAS ELLHGSHTRSISI+TP+N GIMKFAKKQL+C+GCK  +SNG  TLC+ 
Sbjct: 982  RIFEPVLKNASKELLHGSHTRSISITTPSNSGIMKFAKKQLSCVGCKVPISNG--TLCAS 1039

Query: 301  CKGREPELYCKTVAQVSDLEMLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQ 358
            CKGRE ELYCK V+QV++LE +FGRLWTQCQECQGSLHQDVLCTSRDCPIFYRR KAQ
Sbjct: 1040 CKGREAELYCKNVSQVAELEEVFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRMKAQ 1097


>AT1G67500.2 | Symbols: REV3 | recovery protein 3 |
            chr1:25287707-25296714 REVERSE LENGTH=1916
          Length = 1916

 Score =  146 bits (368), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/375 (29%), Positives = 171/375 (45%), Gaps = 19/375 (5%)

Query: 1    MIEHTKKLVEDKFTMLNGYGH-TAEVIYGDTDSVMVQFGVSSVEEAMKLGREAAEYISGT 59
            +++  +  +E   + +N   +  A V+YGDTDS+ V     +V+EA  +G+E A  I+  
Sbjct: 1520 IVQCGRSTLEKAISFVNANDNWNARVVYGDTDSMFVLLKGRTVKEAFVVGQEIASAITEM 1579

Query: 60   FIQPIKLEFEKVYFPYLLISKKRYAGLFWTKPDKFDKM-DAKGIETVRRDNCLLVKNLVN 118
               P+ L+ EKVY P  L++KKRY G  +  P++ + + DAKGIETVRRD C  V   + 
Sbjct: 1580 NPHPVTLKMEKVYHPCFLLTKKRYVGYSYESPNQREPIFDAKGIETVRRDTCEAVAKTME 1639

Query: 119  DCLHKILIDRDIPGAVQYVKNAISDLLMNRMDLSLLVITK----GLTKTGDDYEVKAAHV 174
              L      ++I     Y+      +L  R+ L   +  K    G   T D   +  A +
Sbjct: 1640 QSLRLFFEQKNISKVKSYLYRQWKRILSGRVSLQDFIFAKEVRLGTYSTRDSSLLPPAAI 1699

Query: 175  ELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKNYEKSEDPIFVLENNIP--IDPHYYLE 232
             +A +  K D  T P   +RVPYV+I    GA+  +   DP+ +L+ + P  ++  YY+ 
Sbjct: 1700 -VATKSMKADPRTEPRYAERVPYVVIHGEPGARLVDMVVDPLVLLDVDTPYRLNDLYYIN 1758

Query: 233  NQISKPILRIFEPILKNASNELLHGSH-TRSISISTPTNG-----GIMKFAKKQLTCIGC 286
             QI   + R+F  +  + +   L     TRS     P N        + +      CI C
Sbjct: 1759 KQIIPALQRVFGLVGADLNQWFLEMPRLTRSSLGQRPLNSKNSHKTRIDYFYLSKHCILC 1818

Query: 287  KALLSNGNHTLCSHCKGREPELYCKTVAQVSDLEMLFGRLWTQCQECQGS---LHQDVLC 343
              ++      LC+ C   +       V + S LE     L T C+ C G    +   V C
Sbjct: 1819 GEVVQESAQ-LCNRCLQNKSAAAATIVWKTSKLEREMQHLATICRHCGGGDWVVQSGVKC 1877

Query: 344  TSRDCPIFYRRKKAQ 358
             S  C +FY R+K Q
Sbjct: 1878 NSLACSVFYERRKVQ 1892


>AT1G67500.1 | Symbols: ATREV3, REV3 | recovery protein 3 |
            chr1:25287707-25296714 REVERSE LENGTH=1890
          Length = 1890

 Score =  146 bits (368), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 109/375 (29%), Positives = 171/375 (45%), Gaps = 19/375 (5%)

Query: 1    MIEHTKKLVEDKFTMLNGYGH-TAEVIYGDTDSVMVQFGVSSVEEAMKLGREAAEYISGT 59
            +++  +  +E   + +N   +  A V+YGDTDS+ V     +V+EA  +G+E A  I+  
Sbjct: 1494 IVQCGRSTLEKAISFVNANDNWNARVVYGDTDSMFVLLKGRTVKEAFVVGQEIASAITEM 1553

Query: 60   FIQPIKLEFEKVYFPYLLISKKRYAGLFWTKPDKFDKM-DAKGIETVRRDNCLLVKNLVN 118
               P+ L+ EKVY P  L++KKRY G  +  P++ + + DAKGIETVRRD C  V   + 
Sbjct: 1554 NPHPVTLKMEKVYHPCFLLTKKRYVGYSYESPNQREPIFDAKGIETVRRDTCEAVAKTME 1613

Query: 119  DCLHKILIDRDIPGAVQYVKNAISDLLMNRMDLSLLVITK----GLTKTGDDYEVKAAHV 174
              L      ++I     Y+      +L  R+ L   +  K    G   T D   +  A +
Sbjct: 1614 QSLRLFFEQKNISKVKSYLYRQWKRILSGRVSLQDFIFAKEVRLGTYSTRDSSLLPPAAI 1673

Query: 175  ELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKNYEKSEDPIFVLENNIP--IDPHYYLE 232
             +A +  K D  T P   +RVPYV+I    GA+  +   DP+ +L+ + P  ++  YY+ 
Sbjct: 1674 -VATKSMKADPRTEPRYAERVPYVVIHGEPGARLVDMVVDPLVLLDVDTPYRLNDLYYIN 1732

Query: 233  NQISKPILRIFEPILKNASNELLHGSH-TRSISISTPTNG-----GIMKFAKKQLTCIGC 286
             QI   + R+F  +  + +   L     TRS     P N        + +      CI C
Sbjct: 1733 KQIIPALQRVFGLVGADLNQWFLEMPRLTRSSLGQRPLNSKNSHKTRIDYFYLSKHCILC 1792

Query: 287  KALLSNGNHTLCSHCKGREPELYCKTVAQVSDLEMLFGRLWTQCQECQGS---LHQDVLC 343
              ++      LC+ C   +       V + S LE     L T C+ C G    +   V C
Sbjct: 1793 GEVVQESAQ-LCNRCLQNKSAAAATIVWKTSKLEREMQHLATICRHCGGGDWVVQSGVKC 1851

Query: 344  TSRDCPIFYRRKKAQ 358
             S  C +FY R+K Q
Sbjct: 1852 NSLACSVFYERRKVQ 1866


>AT5G67100.1 | Symbols: ICU2 | DNA-directed DNA polymerases |
            chr5:26776994-26785104 FORWARD LENGTH=1524
          Length = 1524

 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 115/235 (48%), Gaps = 17/235 (7%)

Query: 24   EVIYGDTDSVMVQFGVSSVEEAMKLGREAAEYISGTFIQPIKLEFEKVYFPYLLISKKRY 83
            EVIYGDTDS+M+  G+  +EE   +  +  + ++  + + +K++ + +Y   LL+ KK+Y
Sbjct: 1041 EVIYGDTDSIMIHSGLDDIEEVKAIKSKVIQEVNKKY-RCLKIDCDGIYKRMLLLRKKKY 1099

Query: 84   AG--LFWTKPDKFDKMDAKGIETVRRDNCLLVKNLVNDCLHKILIDRDIPGAVQYVKNAI 141
            A   L +      + ++ KG++ VRRD  LL K + + CL KIL        V+ + N +
Sbjct: 1100 AAVKLQFKDGKPCEDIERKGVDMVRRDWSLLSKEIGDLCLSKILYGGSCEDVVEAIHNEL 1159

Query: 142  ----SDLLMNRMDLSLLVITKGLTKTGDDYEVKAA--HVELAERMRKRDAATAPNVGDRV 195
                 ++   ++ L   VITK LTK    Y    +  HV++A RMR+R      N  D V
Sbjct: 1160 MKIKEEMRNGQVALEKYVITKTLTKPPAAYPDSKSQPHVQVALRMRQRGYKEGFNAKDTV 1219

Query: 196  PYVI--------IKAAKGAKNYEKSEDPIFVLENNIPIDPHYYLENQISKPILRI 242
            PY+I          ++ G     +  D +    +   +D  YYL  QI   + R+
Sbjct: 1220 PYIICYEQGNASSASSAGIAERARHPDEVKSEGSRWLVDIDYYLAQQIHPVVSRL 1274