Miyakogusa Predicted Gene

Lj1g3v1340510.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1340510.1 tr|G7JBL9|G7JBL9_MEDTR 2-oxoisovalerate
dehydrogenase subunit alpha OS=Medicago truncatula
GN=MTR_3g,80.48,0,2-OXOISOVALERATE DEHYDROGENASE ALPHA
SUBUNIT-RELATED,NULL; PYRUVATE DEHYDROGENASE E1 COMPONENT,
ALPH,CUFF.27131.1
         (461 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G09300.1 | Symbols:  | Thiamin diphosphate-binding fold (THDP...   649   0.0  
AT5G09300.2 | Symbols:  | Thiamin diphosphate-binding fold (THDP...   644   0.0  
AT1G21400.1 | Symbols:  | Thiamin diphosphate-binding fold (THDP...   607   e-174
AT5G34780.1 | Symbols:  | Thiamin diphosphate-binding fold (THDP...   307   1e-83
AT1G59900.1 | Symbols: AT-E1 ALPHA, E1 ALPHA | pyruvate dehydrog...   145   6e-35
AT1G24180.1 | Symbols: IAR4 | Thiamin diphosphate-binding fold (...   139   4e-33
AT1G01090.1 | Symbols: PDH-E1 ALPHA | pyruvate dehydrogenase E1 ...   132   5e-31

>AT5G09300.1 | Symbols:  | Thiamin diphosphate-binding fold
           (THDP-binding) superfamily protein |
           chr5:2884282-2886797 REVERSE LENGTH=472
          Length = 472

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 292/399 (73%), Positives = 350/399 (87%)

Query: 63  SNQNQAIDFPGGTVKFTPEMRFIPESTLERTPCYRVLDDNGQPISGTNFAQVSKEVAVKM 122
           +N +Q +DFPGG V FTPE++FI ES  ER PCYRVLDDNGQ I+ + F QVS+EVAVK+
Sbjct: 74  ANNHQVMDFPGGKVAFTPEIQFISESDKERVPCYRVLDDNGQLITNSQFVQVSEEVAVKI 133

Query: 123 YNDMVTLQTMDTIFYEAQRQGRISFYVTTVGEEAINIASAAALTMDDVIFPQYREQGVLL 182
           Y+DMVTLQ MD IFYEAQRQGR+SFY T +GEEAINIASAAALT  DVIFPQYRE GVLL
Sbjct: 134 YSDMVTLQIMDNIFYEAQRQGRLSFYATAIGEEAINIASAAALTPQDVIFPQYREPGVLL 193

Query: 183 WRGFTLQEFANQCFSNKYDNGKGRQMPAHYGSNKHNYITVASTVASQIPHAVGAAYSLKM 242
           WRGFTLQEFANQCF NK D GKGRQMP HYGSNK NY TV++T+A+Q+P+AVGAAYSLKM
Sbjct: 194 WRGFTLQEFANQCFGNKSDYGKGRQMPVHYGSNKLNYFTVSATIATQLPNAVGAAYSLKM 253

Query: 243 DKKNACAVTYFGDGGSSEGDFHAGLNFAAVMEAPVIFLCRNNGWAISTPTSDQFRSDGIV 302
           DKK+ACAVTYFGDGG+SEGDFHA LN AAVMEAPV+F+CRNNGWAISTPTSDQFRSDG+V
Sbjct: 254 DKKDACAVTYFGDGGTSEGDFHAALNIAAVMEAPVLFICRNNGWAISTPTSDQFRSDGVV 313

Query: 303 VKGQAYGVRSIRVDGNDALAIYSAVQAARQMAISEERPVLIEALTYRVGHHSTSDDSTKY 362
           VKG+AYG+RSIRVDGNDALA+YSAV  AR+MAI E+RP+LIEALTYRVGHHSTSDDST+Y
Sbjct: 314 VKGRAYGIRSIRVDGNDALAMYSAVHTAREMAIREQRPILIEALTYRVGHHSTSDDSTRY 373

Query: 363 RPASEIEWWRQARDPVAKFRKWIERNGWWNAVAESELRNSLRQQLLHTIQVAESVEKPPL 422
           R A EIEWW +AR+P+++FR WIE NGWW+   ES+LR+ +++++L  ++VAE  EKP L
Sbjct: 374 RSAGEIEWWNKARNPLSRFRTWIESNGWWSDKTESDLRSRIKKEMLEALRVAEKTEKPNL 433

Query: 423 GDIFSDVYDVPPSNLREQEQWLKETVKNHPKEYPANISV 461
            ++FSDVYDVPPSNLREQE  +++T+ +HP++YP+++ +
Sbjct: 434 QNMFSDVYDVPPSNLREQELLVRQTINSHPQDYPSDVPL 472


>AT5G09300.2 | Symbols:  | Thiamin diphosphate-binding fold
           (THDP-binding) superfamily protein |
           chr5:2884282-2886291 REVERSE LENGTH=401
          Length = 401

 Score =  644 bits (1662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 291/393 (74%), Positives = 346/393 (88%)

Query: 67  QAIDFPGGTVKFTPEMRFIPESTLERTPCYRVLDDNGQPISGTNFAQVSKEVAVKMYNDM 126
           Q +DFPGG V FTPE++FI ES  ER PCYRVLDDNGQ I+ + F QVS+EVAVK+Y+DM
Sbjct: 7   QVMDFPGGKVAFTPEIQFISESDKERVPCYRVLDDNGQLITNSQFVQVSEEVAVKIYSDM 66

Query: 127 VTLQTMDTIFYEAQRQGRISFYVTTVGEEAINIASAAALTMDDVIFPQYREQGVLLWRGF 186
           VTLQ MD IFYEAQRQGR+SFY T +GEEAINIASAAALT  DVIFPQYRE GVLLWRGF
Sbjct: 67  VTLQIMDNIFYEAQRQGRLSFYATAIGEEAINIASAAALTPQDVIFPQYREPGVLLWRGF 126

Query: 187 TLQEFANQCFSNKYDNGKGRQMPAHYGSNKHNYITVASTVASQIPHAVGAAYSLKMDKKN 246
           TLQEFANQCF NK D GKGRQMP HYGSNK NY TV++T+A+Q+P+AVGAAYSLKMDKK+
Sbjct: 127 TLQEFANQCFGNKSDYGKGRQMPVHYGSNKLNYFTVSATIATQLPNAVGAAYSLKMDKKD 186

Query: 247 ACAVTYFGDGGSSEGDFHAGLNFAAVMEAPVIFLCRNNGWAISTPTSDQFRSDGIVVKGQ 306
           ACAVTYFGDGG+SEGDFHA LN AAVMEAPV+F+CRNNGWAISTPTSDQFRSDG+VVKG+
Sbjct: 187 ACAVTYFGDGGTSEGDFHAALNIAAVMEAPVLFICRNNGWAISTPTSDQFRSDGVVVKGR 246

Query: 307 AYGVRSIRVDGNDALAIYSAVQAARQMAISEERPVLIEALTYRVGHHSTSDDSTKYRPAS 366
           AYG+RSIRVDGNDALA+YSAV  AR+MAI E+RP+LIEALTYRVGHHSTSDDST+YR A 
Sbjct: 247 AYGIRSIRVDGNDALAMYSAVHTAREMAIREQRPILIEALTYRVGHHSTSDDSTRYRSAG 306

Query: 367 EIEWWRQARDPVAKFRKWIERNGWWNAVAESELRNSLRQQLLHTIQVAESVEKPPLGDIF 426
           EIEWW +AR+P+++FR WIE NGWW+   ES+LR+ +++++L  ++VAE  EKP L ++F
Sbjct: 307 EIEWWNKARNPLSRFRTWIESNGWWSDKTESDLRSRIKKEMLEALRVAEKTEKPNLQNMF 366

Query: 427 SDVYDVPPSNLREQEQWLKETVKNHPKEYPANI 459
           SDVYDVPPSNLREQE  +++T+ +HP++YP+++
Sbjct: 367 SDVYDVPPSNLREQELLVRQTINSHPQDYPSDV 399


>AT1G21400.1 | Symbols:  | Thiamin diphosphate-binding fold
           (THDP-binding) superfamily protein |
           chr1:7493492-7496240 FORWARD LENGTH=472
          Length = 472

 Score =  607 bits (1565), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 277/400 (69%), Positives = 332/400 (83%)

Query: 62  DSNQNQAIDFPGGTVKFTPEMRFIPESTLERTPCYRVLDDNGQPISGTNFAQVSKEVAVK 121
           D    Q +DFPGG V +T EM+FIPES+  R PCYRVLD++G+ I  ++F  VS+++AV+
Sbjct: 73  DEVDAQELDFPGGKVGYTSEMKFIPESSSRRIPCYRVLDEDGRIIPDSDFIPVSEKLAVR 132

Query: 122 MYNDMVTLQTMDTIFYEAQRQGRISFYVTTVGEEAINIASAAALTMDDVIFPQYREQGVL 181
           MY  M TLQ MD IFYEAQRQGRISFY+T+VGEEAINIASAAAL+ DDV+ PQYRE GVL
Sbjct: 133 MYEQMATLQVMDHIFYEAQRQGRISFYLTSVGEEAINIASAAALSPDDVVLPQYREPGVL 192

Query: 182 LWRGFTLQEFANQCFSNKYDNGKGRQMPAHYGSNKHNYITVASTVASQIPHAVGAAYSLK 241
           LWRGFTL+EFANQCF NK D GKGRQMP HYGSN+ NY T++S +A+Q+P A G  YSLK
Sbjct: 193 LWRGFTLEEFANQCFGNKADYGKGRQMPIHYGSNRLNYFTISSPIATQLPQAAGVGYSLK 252

Query: 242 MDKKNACAVTYFGDGGSSEGDFHAGLNFAAVMEAPVIFLCRNNGWAISTPTSDQFRSDGI 301
           MDKKNAC VT+ GDGG+SEGDFHAGLNFAAVMEAPV+F+CRNNGWAIST  S+QFRSDGI
Sbjct: 253 MDKKNACTVTFIGDGGTSEGDFHAGLNFAAVMEAPVVFICRNNGWAISTHISEQFRSDGI 312

Query: 302 VVKGQAYGVRSIRVDGNDALAIYSAVQAARQMAISEERPVLIEALTYRVGHHSTSDDSTK 361
           VVKGQAYG+RSIRVDGNDALA+YSAV++AR+MA++E+RPVLIE +TYRVGHHSTSDDSTK
Sbjct: 313 VVKGQAYGIRSIRVDGNDALAVYSAVRSAREMAVTEQRPVLIEMMTYRVGHHSTSDDSTK 372

Query: 362 YRPASEIEWWRQARDPVAKFRKWIERNGWWNAVAESELRNSLRQQLLHTIQVAESVEKPP 421
           YR A EI++W+ +R+PV +FRKW+E NGWW+   ES+LR++ R+QLL  IQ AE  EK P
Sbjct: 373 YRAADEIQYWKMSRNPVNRFRKWVEDNGWWSEEDESKLRSNARKQLLQAIQAAEKWEKQP 432

Query: 422 LGDIFSDVYDVPPSNLREQEQWLKETVKNHPKEYPANISV 461
           L ++F+DVYDV P NL EQE  LKE VK  P++YP    V
Sbjct: 433 LTELFNDVYDVKPKNLEEQELGLKELVKKQPQDYPPGFHV 472


>AT5G34780.1 | Symbols:  | Thiamin diphosphate-binding fold
           (THDP-binding) superfamily protein |
           chr5:12961682-12963892 REVERSE LENGTH=365
          Length = 365

 Score =  307 bits (787), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 146/212 (68%), Positives = 180/212 (84%)

Query: 244 KKNACAVTYFGDGGSSEGDFHAGLNFAAVMEAPVIFLCRNNGWAISTPTSDQFRSDGIVV 303
           +KNACAVT+ GDGG+SEGDFHAGLNFAAVMEAPV+F+CRNNGWAIST  S+QFRSDGIVV
Sbjct: 25  EKNACAVTFIGDGGTSEGDFHAGLNFAAVMEAPVVFICRNNGWAISTHISEQFRSDGIVV 84

Query: 304 KGQAYGVRSIRVDGNDALAIYSAVQAARQMAISEERPVLIEALTYRVGHHSTSDDSTKYR 363
           KGQAYG+RSIRVDGNDALA+YSAV +AR+MA++E+RPVLIE + YRVGHHSTSDDSTKYR
Sbjct: 85  KGQAYGIRSIRVDGNDALAVYSAVCSAREMAVTEQRPVLIEMMIYRVGHHSTSDDSTKYR 144

Query: 364 PASEIEWWRQARDPVAKFRKWIERNGWWNAVAESELRNSLRQQLLHTIQVAESVEKPPLG 423
            A EI++W+ +R+ V +FRK +E NGWW+   ES+LR++ R+QLL  IQ AE  EK PL 
Sbjct: 145 AADEIQYWKMSRNSVNRFRKSVEDNGWWSEEDESKLRSNARKQLLQAIQAAEKWEKQPLT 204

Query: 424 DIFSDVYDVPPSNLREQEQWLKETVKNHPKEY 455
           ++F+DVYDV P NL E+E  LKE ++  P++Y
Sbjct: 205 ELFNDVYDVKPKNLEEEELGLKELIEKQPQDY 236


>AT1G59900.1 | Symbols: AT-E1 ALPHA, E1 ALPHA | pyruvate
           dehydrogenase complex E1 alpha subunit |
           chr1:22051368-22053660 FORWARD LENGTH=389
          Length = 389

 Score =  145 bits (366), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 139/278 (50%), Gaps = 3/278 (1%)

Query: 153 GEEAINIASAAALTMDDVIFPQYREQGVLLWRGFTLQEFANQCFSNKYDNGKGRQMPAHY 212
           G+EA+ I   AA+T  D I   YR+  + L RG +L E  ++    +    KG+    H+
Sbjct: 94  GQEAVAIGMEAAITKKDAIITAYRDHCIFLGRGGSLHEVFSELMGRQAGCSKGKGGSMHF 153

Query: 213 GSNKHNYITVASTVASQIPHAVGAAYSLKMDKKNACAVTYFGDGGSSEGDFHAGLNFAAV 272
              + ++      V +Q+P   G A++ K +K+ A     +GDG +++G     LN +A+
Sbjct: 154 YKKESSFYGGHGIVGAQVPLGCGIAFAQKYNKEEAVTFALYGDGAANQGQLFEALNISAL 213

Query: 273 MEAPVIFLCRNNGWAISTPTSDQFRSDGIVVKGQAYGVRSIRVDGNDALAIYSAVQAARQ 332
            + P I +C NN + + T      +S     +G    V  ++VDG DA A+  A + A+Q
Sbjct: 214 WDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDY--VPGLKVDGMDAFAVKQACKFAKQ 271

Query: 333 MAISEERPVLIEALTYRVGHHSTSDDSTKYRPASEIEWWRQARDPVAKFRKWIERNGWWN 392
            A+ E+ P+++E  TYR   HS SD  + YR   EI   RQ RDP+ + +K +  +    
Sbjct: 272 HAL-EKGPIILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIKKLVLSHDLAT 330

Query: 393 AVAESELRNSLRQQLLHTIQVAESVEKPPLGDIFSDVY 430
                ++   +R+++   I  A+    P   ++F++VY
Sbjct: 331 EKELKDMEKEIRKEVDDAIAKAKDCPMPEPSELFTNVY 368


>AT1G24180.1 | Symbols: IAR4 | Thiamin diphosphate-binding fold
           (THDP-binding) superfamily protein |
           chr1:8560777-8563382 REVERSE LENGTH=393
          Length = 393

 Score =  139 bits (350), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 152/322 (47%), Gaps = 10/322 (3%)

Query: 113 QVSKEVAVKMYNDMVTLQTM----DTIFYEAQRQGRISFYVTTVGEEAINIASAAALTMD 168
           + S E  +  + DM  ++ M    D+++     +G    Y    G+EA+ +   AA+T  
Sbjct: 57  ETSSEEILAFFRDMARMRRMEIAADSLYKAKLIRGFCHLYD---GQEALAVGMEAAITKK 113

Query: 169 DVIFPQYREQGVLLWRGFTLQEFANQCFSNKYDNGKGRQMPAHYGSNKHNYITVASTVAS 228
           D I   YR+    + RG  L +  ++    K     G+    H+     ++      V +
Sbjct: 114 DAIITSYRDHCTFIGRGGKLVDAFSELMGRKTGCSHGKGGSMHFYKKDASFYGGHGIVGA 173

Query: 229 QIPHAVGAAYSLKMDKKNACAVTYFGDGGSSEGDFHAGLNFAAVMEAPVIFLCRNNGWAI 288
           QIP   G A++ K +K  A     +GDG +++G     LN +A+ + P I +C NN + +
Sbjct: 174 QIPLGCGLAFAQKYNKDEAVTFALYGDGAANQGQLFEALNISALWDLPAILVCENNHYGM 233

Query: 289 STPTSDQFRSDGIVVKGQAYGVRSIRVDGNDALAIYSAVQAARQMAISEERPVLIEALTY 348
            T T    +S     +G    V  ++VDG DALA+  A + A++ A+ +  P+++E  TY
Sbjct: 234 GTATWRSAKSPAYFKRGDY--VPGLKVDGMDALAVKQACKFAKEHAL-KNGPIILEMDTY 290

Query: 349 RVGHHSTSDDSTKYRPASEIEWWRQARDPVAKFRKWIERNGWWNAVAESELRNSLRQQLL 408
           R   HS SD  + YR   EI   RQ RDP+ + RK +  +         ++   +R+++ 
Sbjct: 291 RYHGHSMSDPGSTYRTRDEISGVRQVRDPIERVRKLLLTHDIATEKELKDMEKEIRKEVD 350

Query: 409 HTIQVAESVEKPPLGDIFSDVY 430
             +  A+    P   ++F+++Y
Sbjct: 351 DAVAQAKESPIPDASELFTNMY 372


>AT1G01090.1 | Symbols: PDH-E1 ALPHA | pyruvate dehydrogenase E1
           alpha | chr1:47705-49166 REVERSE LENGTH=428
          Length = 428

 Score =  132 bits (332), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 153/327 (46%), Gaps = 9/327 (2%)

Query: 114 VSKEVAVKMYNDMVTLQTMDTIFYEAQRQGRISFYVTTV-GEEAINIASAAALTMDDVIF 172
           ++KE  +++Y DM+  ++ + +  +   +G++  +V    G+EA++      LT  D + 
Sbjct: 79  ITKEEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLTKSDSVV 138

Query: 173 PQYREQGVLLWRGFTLQEFANQCFSNKYDNGKGRQMPAHYGSNKHNYITVASTVASQIPH 232
             YR+    L +G + +   ++ F       +G+    H  S +HN +   + +   IP 
Sbjct: 139 STYRDHVHALSKGVSARAVMSELFGKVTGCCRGQGGSMHMFSKEHNMLGGFAFIGEGIPV 198

Query: 233 AVGAAYSLKMDK---KNAC---AVTYFGDGGSSEGDFHAGLNFAAVMEAPVIFLCRNNGW 286
           A GAA+S K  +   K  C    V +FGDG  + G F   LN AA+ + P+IF+  NN W
Sbjct: 199 ATGAAFSSKYRREVLKQDCDDVTVAFFGDGTCNNGQFFECLNMAALYKLPIIFVVENNLW 258

Query: 287 AISTPTSDQFRSDGIVVKGQAYGVRSIRVDGNDALAIYSAVQAARQMAISEERPVLIEAL 346
           AI            I  KG A+G+  + VDG D L +    + A   A   E P L+E  
Sbjct: 259 AIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAVTRARRGEGPTLVECE 318

Query: 347 TYRVGHHSTSDDSTKYRPASEIEWWRQARDPVAKFRKWIERNGWWNAVAESELRNSLRQQ 406
           TYR   HS +D   + R A+E   +  ARDP+A  +K++  N          +   + + 
Sbjct: 319 TYRFRGHSLADPD-ELRDAAEKAKY-AARDPIAALKKYLIENKLAKEAELKSIEKKIDEL 376

Query: 407 LLHTIQVAESVEKPPLGDIFSDVYDVP 433
           +   ++ A++  +P    +  +V+  P
Sbjct: 377 VEEAVEFADASPQPGRSQLLENVFADP 403