Miyakogusa Predicted Gene

Lj1g3v1318290.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1318290.1 Non Chatacterized Hit- tr|I3SY87|I3SY87_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,100,0,seg,NULL;
Arginase/deacetylase,NULL; Hist_deacetyl,Histone deacetylase domain;
HDASUPER,Histone deac,NODE_26479_length_899_cov_104.684090.path1.1
         (215 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G33470.1 | Symbols: hda14, ATHDA14 | histone deacetylase 14 |...   352   1e-97
AT5G61060.1 | Symbols: HDA05, HDA5, ATHDA5 | histone deacetylase...   122   2e-28
AT5G61060.2 | Symbols: HDA05 | histone deacetylase 5 | chr5:2456...   122   2e-28
AT5G61070.1 | Symbols: HDA18, ATHDA18 | histone deacetylase of t...   120   7e-28
AT3G18520.1 | Symbols: HDA15, ATHDA15 | histone deacetylase 15 |...   119   1e-27
AT3G18520.2 | Symbols: HDA15, ATHDA15 | histone deacetylase 15 |...   119   1e-27
AT1G08460.1 | Symbols: HDA08, HDA8, ATHDA8 | histone deacetylase...   114   5e-26
AT5G63110.1 | Symbols: HDA6, AXE1, ATHDA6, RTS1, RPD3B, SIL1 | h...    69   3e-12
AT4G38130.2 | Symbols: HD1, ATHD1, HDA1, RPD3A, HDA19 | histone ...    66   2e-11
AT4G38130.1 | Symbols: HD1, ATHD1, HDA1, RPD3A, HDA19, ATHDA19 |...    65   2e-11
AT3G44680.1 | Symbols: HDA9, HDA09 | histone deacetylase 9 | chr...    64   8e-11
AT5G26040.2 | Symbols: HDA2 | histone deacetylase 2 | chr5:90993...    58   5e-09
AT5G35600.1 | Symbols: HDA7 | histone deacetylase7 | chr5:137701...    50   8e-07

>AT4G33470.1 | Symbols: hda14, ATHDA14 | histone deacetylase 14 |
           chr4:16102774-16105439 REVERSE LENGTH=423
          Length = 423

 Score =  352 bits (902), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 166/215 (77%), Positives = 182/215 (84%)

Query: 1   MGFCVFGNVAIAARYAQRVHALKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSFHQDGSYP 60
           MGFCVFGNVAIAAR+AQR H LKR+FIIDFDVHHGNGTNDAF +DPDIFFLS HQDGSYP
Sbjct: 209 MGFCVFGNVAIAARHAQRTHGLKRIFIIDFDVHHGNGTNDAFTEDPDIFFLSTHQDGSYP 268

Query: 61  GTGKFXXXXXXXXXXXXLNLPLPGGSGDTAIRTVFDEVVVPCAQRFKPDIILVSAGYDGH 120
           GTGK             LNLPLPGGSGD A+RTVF+E++VPCAQRFKPDIILVSAGYD H
Sbjct: 269 GTGKISDIGKGKGEGTTLNLPLPGGSGDIAMRTVFEEIIVPCAQRFKPDIILVSAGYDAH 328

Query: 121 VLDPLANLQFTTGTYYMLASSIKQLAKDLCGGRCVFFLEGGYNLKSLSYSVADSFRALIG 180
           VLDPLANLQFTT TYY LA  IK+LAK++CGGRCVFFLEGGYNL+SLS SVADSFRAL+G
Sbjct: 329 VLDPLANLQFTTATYYSLAKDIKRLAKEVCGGRCVFFLEGGYNLESLSSSVADSFRALLG 388

Query: 181 DQSLASEFDNPNILYEEPTAKIKQAIQRIKHIHSL 215
           + SLASEFDNP  LY+EP  K++ AIQR K IH L
Sbjct: 389 EDSLASEFDNPAYLYDEPMRKVRDAIQRAKSIHCL 423


>AT5G61060.1 | Symbols: HDA05, HDA5, ATHDA5 | histone deacetylase 5
           | chr5:24567137-24570917 REVERSE LENGTH=660
          Length = 660

 Score =  122 bits (306), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 111/217 (51%), Gaps = 16/217 (7%)

Query: 1   MGFCVFGNVAIAARYAQRVH---ALKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSFHQ-- 55
           MGFC+F NVA+AA +         +K++ I+D+DVHHGNGT   F+ DP + F S H+  
Sbjct: 165 MGFCLFNNVAVAASFLLNERPDLGVKKILIVDWDVHHGNGTQKMFWKDPRVLFFSVHRHE 224

Query: 56  -DGSYPG--TGKFXXXXXXXXXXXXLNLPL-PGGSGDTAIRTVFDEVVVPCAQRFKPDII 111
             G YP    G +            +N+P   G  GD      +D +++P A+ F PD+I
Sbjct: 225 YGGFYPAGDDGDYNMVGEGPGEGFNINVPWDQGRCGDADYLAAWDHILIPVAREFNPDVI 284

Query: 112 LVSAGYDGHVLDPLANLQFTTGTYYMLASSIKQLAKDLCGGRCVFFLEGGYNLKSLSYSV 171
            +SAG+D  + DPL     T   Y ++   + + A+    G+ V  LEGGYNL S++ S 
Sbjct: 285 FLSAGFDAAINDPLGGCCVTPYGYSVMLKKLMEFAQ----GKIVLALEGGYNLDSIAKSS 340

Query: 172 ADSFRALIGDQSLASEFDNPNILYEEPTAKIKQAIQR 208
               + L+ D+ +      P     E T ++ QA+++
Sbjct: 341 LACVQVLLEDKQIQGP---PEAYPFESTWRVIQAVRK 374


>AT5G61060.2 | Symbols: HDA05 | histone deacetylase 5 |
           chr5:24567137-24570917 REVERSE LENGTH=664
          Length = 664

 Score =  122 bits (306), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 109/217 (50%), Gaps = 12/217 (5%)

Query: 1   MGFCVFGNVAIAARYAQRVH---ALKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSFHQ-- 55
           MGFC+F NVA+AA +         +K++ I+D+DVHHGNGT   F+ DP + F S H+  
Sbjct: 165 MGFCLFNNVAVAASFLLNERPDLGVKKILIVDWDVHHGNGTQKMFWKDPRVLFFSVHRHE 224

Query: 56  -DGSYPG--TGKFXXXXXXXXXXXXLNLPL-PGGSGDTAIRTVFDEVVVPCAQRFKPDII 111
             G YP    G +            +N+P   G  GD      +D +++P A+ F PD+I
Sbjct: 225 YGGFYPAGDDGDYNMVGEGPGEGFNINVPWDQGRCGDADYLAAWDHILIPVAREFNPDVI 284

Query: 112 LVSAGYDGHVLDPLANLQFTTGTYYMLASSIKQLAKDLCGGRCVFFLEGGYNLKSLSYSV 171
            +SAG+D  + DPL     T   Y ++   +     +   G+ V  LEGGYNL S++ S 
Sbjct: 285 FLSAGFDAAINDPLGGCCVTPYGYSVMLKKVGVELMEFAQGKIVLALEGGYNLDSIAKSS 344

Query: 172 ADSFRALIGDQSLASEFDNPNILYEEPTAKIKQAIQR 208
               + L+ D+ +      P     E T ++ QA+++
Sbjct: 345 LACVQVLLEDKQIQGP---PEAYPFESTWRVIQAVRK 378


>AT5G61070.1 | Symbols: HDA18, ATHDA18 | histone deacetylase of the
           RPD3/HDA1 superfamily 18 | chr5:24571297-24574372
           REVERSE LENGTH=682
          Length = 682

 Score =  120 bits (301), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 73/216 (33%), Positives = 112/216 (51%), Gaps = 16/216 (7%)

Query: 1   MGFCVFGNVAIAARYAQRVHA---LKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSFHQD- 56
           MGFC+F NVA+AA +         +K++ I+D+D+HHGNGT   F+ D  +   S H+  
Sbjct: 198 MGFCLFNNVAVAASFLLNERPDLDVKKILIVDWDIHHGNGTQKMFWKDSRVLIFSVHRHD 257

Query: 57  -GS-YP--GTGKFXXXXXXXXXXXXLNLPLP-GGSGDTAIRTVFDEVVVPCAQRFKPDII 111
            GS YP    G F            +N+P   GG GD     V++ +++P  + FKPDII
Sbjct: 258 HGSFYPFGDDGDFNMVGEGPGEGFNINVPWEQGGCGDADYLAVWNHILIPVTKEFKPDII 317

Query: 112 LVSAGYDGHVLDPLANLQFTTGTYYMLASSIKQLAKDLCGGRCVFFLEGGYNLKSLSYSV 171
           L+SAG+D  + DPL     T   Y ++   + + A     G+ V  LEGGYNL+SL  S 
Sbjct: 318 LLSAGFDAAIGDPLGGCCVTPYGYSVMLKKLMEFAH----GKIVLALEGGYNLESLGKSS 373

Query: 172 ADSFRALIGDQSLASEFDNPNILYEEPTAKIKQAIQ 207
               + L+ D+ +    +   +   E T ++ QA++
Sbjct: 374 LACVQVLLEDKQIHGSSETYPL---ESTRRVIQAVR 406


>AT3G18520.1 | Symbols: HDA15, ATHDA15 | histone deacetylase 15 |
           chr3:6361605-6365367 FORWARD LENGTH=552
          Length = 552

 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/186 (38%), Positives = 99/186 (53%), Gaps = 9/186 (4%)

Query: 1   MGFCVFGNVAIAARYAQRVHALKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSFHQDGS-- 58
           MGFC+  N A+AA  AQ     K+V I+D+DVHHGNGT + F  +  + ++S H+     
Sbjct: 284 MGFCLHNNAAVAALVAQAA-GAKKVLIVDWDVHHGNGTQEIFEQNKSVLYISLHRHEGGN 342

Query: 59  -YPGTGKFXXXXXXXXXXXXLNLPLP-GGSGDTAIRTVFDEVVVPCAQRFKPDIILVSAG 116
            YPGTG              +N+P   GG GD      F  VV+P A  F PD +++SAG
Sbjct: 343 FYPGTGAADEVGSNGGEGYCVNVPWSCGGVGDKDYIFAFQHVVLPIASAFSPDFVIISAG 402

Query: 117 YDGHVLDPLANLQFTTGTYYMLASSIKQLAKDLCGGRCVFFLEGGYNLKSLSYSVADSFR 176
           +D    DPL     T   Y    S + Q+  DLCGG+ +  LEGGYNL+S+S S     +
Sbjct: 403 FDAARGDPLGCCDVTPAGY----SRMTQMLGDLCGGKMLVILEGGYNLRSISASATAVIK 458

Query: 177 ALIGDQ 182
            L+G+ 
Sbjct: 459 VLLGEN 464


>AT3G18520.2 | Symbols: HDA15, ATHDA15 | histone deacetylase 15 |
           chr3:6361605-6365399 FORWARD LENGTH=564
          Length = 564

 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/186 (39%), Positives = 101/186 (54%), Gaps = 9/186 (4%)

Query: 1   MGFCVFGNVAIAARYAQRVHALKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSFHQ-DGS- 58
           MGFC+  N A+AA  AQ     K+V I+D+DVHHGNGT + F  +  + ++S H+ +G  
Sbjct: 284 MGFCLHNNAAVAALVAQAA-GAKKVLIVDWDVHHGNGTQEIFEQNKSVLYISLHRHEGGN 342

Query: 59  -YPGTGKFXXXXXXXXXXXXLNLPLP-GGSGDTAIRTVFDEVVVPCAQRFKPDIILVSAG 116
            YPGTG              +N+P   GG GD      F  VV+P A  F PD +++SAG
Sbjct: 343 FYPGTGAADEVGSNGGEGYCVNVPWSCGGVGDKDYIFAFQHVVLPIASAFSPDFVIISAG 402

Query: 117 YDGHVLDPLANLQFTTGTYYMLASSIKQLAKDLCGGRCVFFLEGGYNLKSLSYSVADSFR 176
           +D    DPL     T   Y    S + Q+  DLCGG+ +  LEGGYNL+S+S S     +
Sbjct: 403 FDAARGDPLGCCDVTPAGY----SRMTQMLGDLCGGKMLVILEGGYNLRSISASATAVIK 458

Query: 177 ALIGDQ 182
            L+G+ 
Sbjct: 459 VLLGEN 464


>AT1G08460.1 | Symbols: HDA08, HDA8, ATHDA8 | histone deacetylase 8
           | chr1:2672527-2674469 FORWARD LENGTH=377
          Length = 377

 Score =  114 bits (285), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 100/218 (45%), Gaps = 7/218 (3%)

Query: 2   GFCVFGNVAIAARYAQRVHALKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSFHQD----- 56
           G+C   N A+A + A    +  RV +ID DVH+GNGT + FY    +  +S H +     
Sbjct: 153 GYCFLNNAALAVKLALNSGSCSRVAVIDIDVHYGNGTAEGFYTSDKVLTVSLHMNHGSWG 212

Query: 57  GSYPGTGKFXXXXXXXXXXXXLNLPLPGGSGDTAIRTVFDEVVVPCAQRFKPDIILVSAG 116
            S+P  G              LN+PLP G+GD       +E+VVP  +RF PD++++  G
Sbjct: 213 SSHPQKGSIDELGEDVGLGYNLNVPLPNGTGDRGYEYAMNELVVPAVRRFGPDMVVLVVG 272

Query: 117 YDGHVLDPLANLQFTTGTYYMLASSIKQLAKDLCGGRCVFFLEGGYNLKSLSYSVADSFR 176
            D    DP      T   Y  +   ++ +A++   GR +   EGGY++   +Y +     
Sbjct: 273 QDSSAFDPNGRQSLTMNGYRRIGQIMRGVAEEHSHGRLLMVQEGGYHVTYAAYCLHAMLE 332

Query: 177 ALIGDQSLASEFDNPNILYEEPTAKIKQAIQRIKHIHS 214
            ++  +       +P   Y E  A    A++ IK  H+
Sbjct: 333 GVL--KIPEPHLSDPIAYYPEEEANAVAAVESIKTYHT 368


>AT5G63110.1 | Symbols: HDA6, AXE1, ATHDA6, RTS1, RPD3B, SIL1 |
           histone deacetylase 6 | chr5:25315834-25318227 REVERSE
           LENGTH=471
          Length = 471

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 2   GFCVFGNVAIAARYAQRVHALKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSFHQDGS-YP 60
           GFC   ++ +     + +   KRV  ID DVHHG+G  +AFY    +  +SFH+ G  +P
Sbjct: 161 GFCYVNDIVLGI--LELLKMFKRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFP 218

Query: 61  GTGKFXXXXXXXXXXXXLNLPLPGGSGDTAIRTVFDEVVVPCAQRFKPDIILVSAGYD 118
           GTG              LN+PL  G  D + R++F  ++    + ++P+ +++  G D
Sbjct: 219 GTGHIRDVGAEKGKYYALNVPLNDGMDDESFRSLFRPLIQKVMEVYQPEAVVLQCGAD 276


>AT4G38130.2 | Symbols: HD1, ATHD1, HDA1, RPD3A, HDA19 | histone
           deacetylase 1 | chr4:17896663-17899057 REVERSE
           LENGTH=469
          Length = 469

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 3/118 (2%)

Query: 2   GFCVFGNVAIAARYAQRVHALKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSFHQDGSY-P 60
           GFC   ++ +A     + H  +RV  +D D+HHG+G  +AFY    +  +SFH+ G Y P
Sbjct: 157 GFCYVNDIVLAILELLKQH--ERVLYVDIDIHHGDGVEEAFYATDRVMTVSFHKFGDYFP 214

Query: 61  GTGKFXXXXXXXXXXXXLNLPLPGGSGDTAIRTVFDEVVVPCAQRFKPDIILVSAGYD 118
           GTG              LN+PL  G  D +   +F  ++    + F+P  +++  G D
Sbjct: 215 GTGHIQDIGYGSGKYYSLNVPLDDGIDDESYHLLFKPIMGKVMEIFRPGAVVLQCGAD 272


>AT4G38130.1 | Symbols: HD1, ATHD1, HDA1, RPD3A, HDA19, ATHDA19 |
           histone deacetylase 1 | chr4:17896493-17899057 REVERSE
           LENGTH=501
          Length = 501

 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 3/118 (2%)

Query: 2   GFCVFGNVAIAARYAQRVHALKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSFHQDGSY-P 60
           GFC   ++ +A     + H  +RV  +D D+HHG+G  +AFY    +  +SFH+ G Y P
Sbjct: 157 GFCYVNDIVLAILELLKQH--ERVLYVDIDIHHGDGVEEAFYATDRVMTVSFHKFGDYFP 214

Query: 61  GTGKFXXXXXXXXXXXXLNLPLPGGSGDTAIRTVFDEVVVPCAQRFKPDIILVSAGYD 118
           GTG              LN+PL  G  D +   +F  ++    + F+P  +++  G D
Sbjct: 215 GTGHIQDIGYGSGKYYSLNVPLDDGIDDESYHLLFKPIMGKVMEIFRPGAVVLQCGAD 272


>AT3G44680.1 | Symbols: HDA9, HDA09 | histone deacetylase 9 |
           chr3:16226769-16229752 REVERSE LENGTH=426
          Length = 426

 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 4/146 (2%)

Query: 2   GFCVFGNVAIAARYAQRVHALKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSFHQ--DGSY 59
           GFC   ++ +      + H   RV  ID DVHHG+G  +AFY    +  +SFH+  D  +
Sbjct: 145 GFCYINDLVLGILELLKHHP--RVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDKFF 202

Query: 60  PGTGKFXXXXXXXXXXXXLNLPLPGGSGDTAIRTVFDEVVVPCAQRFKPDIILVSAGYDG 119
           PGTG              +N+PL  G  D++   +F  ++    + ++P  I++  G D 
Sbjct: 203 PGTGDVKEIGEREGKFYAINVPLKDGIDDSSFNRLFRTIISKVVEIYQPGAIVLQCGADS 262

Query: 120 HVLDPLANLQFTTGTYYMLASSIKQL 145
              D L     +   +      +K+ 
Sbjct: 263 LARDRLGCFNLSIDGHAECVKFVKKF 288


>AT5G26040.2 | Symbols: HDA2 | histone deacetylase 2 |
           chr5:9099321-9101598 REVERSE LENGTH=387
          Length = 387

 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 9/177 (5%)

Query: 2   GFCVFGNVAIAARYAQRVHALKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSFHQDGSYPG 61
           GFC F ++++   +A     + RV IID D H GNG      DD  ++ L  +    YP 
Sbjct: 209 GFCAFADISLCIHFAFLRLRISRVMIIDLDAHQGNGHETDLGDDNRVYILDMYNPEIYPF 268

Query: 62  TGKFXXXXXXXXXXXXLNLPLPGGSGDTAIRTVFDEVVVPCAQRFKPDIILVSAGYDGHV 121
             +                 + G + D  +R + DE +   ++ F+P++++ +AG D   
Sbjct: 269 DYRARRFIDQKVEV------MSGTTTDEYLRKL-DEALEVASRNFQPELVIYNAGTDILD 321

Query: 122 LDPLANLQFTTGTYYMLASSIKQLAKDLCGGRCVFFLEGGYNLKSLSYSVADSFRAL 178
            DPL  L+ +          + + A++      V    GGY +KS +  +ADS   L
Sbjct: 322 GDPLGLLKISPDGITSRDEKVFRFARE-KNIPLVMLTSGGY-MKSSARVIADSIENL 376


>AT5G35600.1 | Symbols: HDA7 | histone deacetylase7 |
           chr5:13770121-13771712 REVERSE LENGTH=409
          Length = 409

 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 5/130 (3%)

Query: 2   GFCVFGNVAIAARYAQRVHALKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSFHQDGSYPG 61
           GF    +V +A    + + + KRV  I+    HG+   +AF D   +  +SFH+ G    
Sbjct: 156 GFGYVNDVVLAI--LELLKSFKRVLYIEIGFPHGDEVEEAFKDTDRVMTVSFHKVGD--- 210

Query: 62  TGKFXXXXXXXXXXXXLNLPLPGGSGDTAIRTVFDEVVVPCAQRFKPDIILVSAGYDGHV 121
           TG              LN PL  G  D ++R +F  V+    + ++P++I++  G D   
Sbjct: 211 TGDISDYGEGKGQYYSLNAPLKDGLDDFSLRGLFIPVIHRAMEIYEPEVIVLQCGADSLA 270

Query: 122 LDPLANLQFT 131
            DP      +
Sbjct: 271 GDPFGTFNLS 280