Miyakogusa Predicted Gene

Lj1g3v1316960.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1316960.1 Non Chatacterized Hit- tr|K4C4A3|K4C4A3_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,56.41,7e-16,PEN-2,Gamma-secretase aspartyl protease complex,
presenilin enhancer-2 subunit; GAMMA-SECRETASE SUBU,CUFF.27111.1
         (136 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G09310.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Gamma-secr...   159   5e-40

>AT5G09310.1 | Symbols:  | CONTAINS InterPro DOMAIN/s:
           Gamma-secretase aspartyl protease complex, presenilin
           enhancer-2 subunit (InterPro:IPR019379); Has 168 Blast
           hits to 168 proteins in 71 species: Archae - 0; Bacteria
           - 0; Metazoa - 126; Fungi - 0; Plants - 36; Viruses - 0;
           Other Eukaryotes - 6 (source: NCBI BLink). |
           chr5:2887403-2888501 REVERSE LENGTH=146
          Length = 146

 Score =  159 bits (402), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 75/111 (67%), Positives = 91/111 (81%)

Query: 23  SSLPLWPTIDGQLGLSEEESEKHARRFYNFGFXXXXXXXXXNCFYFWPVLRHAHSFPRIR 82
           SS  +WPTIDG LGL+EE S  +ARRFY FGF         NCFYFWPVLRH+ +FP+IR
Sbjct: 33  SSAQVWPTIDGPLGLTEEASVDYARRFYKFGFALLPWLWFVNCFYFWPVLRHSRAFPQIR 92

Query: 83  PYIVGSAVGFAVFTALLCSWALTFSIGGERLFGPVWDQLVMYNLADRLGLT 133
            Y+V SA+GF+VFTALL +WALTFSIGGE+LFGP++D+LVMYN+ADRLGL+
Sbjct: 93  NYVVRSAIGFSVFTALLSAWALTFSIGGEQLFGPLYDKLVMYNVADRLGLS 143