Miyakogusa Predicted Gene

Lj1g3v1290380.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1290380.1 tr|G7LD35|G7LD35_MEDTR Protein IDA-like protein
OS=Medicago truncatula GN=MTR_8g092860 PE=4
SV=1,80,1e-16,seg,NULL,NODE_65681_length_804_cov_27.624378.path1.1
         (76 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G64667.1 | Symbols: IDL2 | inflorescence deficient in absciss...    52   6e-08
AT3G18715.1 | Symbols: IDL4 | inflorescence deficient in absciss...    51   2e-07
AT5G09805.1 | Symbols: IDL3 | inflorescence deficient in absciss...    47   2e-06

>AT5G64667.1 | Symbols: IDL2 | inflorescence deficient in
          abscission (IDA)-like 2 | chr5:25850797-25851084
          FORWARD LENGTH=95
          Length = 95

 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 38/62 (61%), Gaps = 8/62 (12%)

Query: 22 GHCHGSR-NSNVFKLKHKSQHHG-------HFFGFLPKRMPIPYSTPSRKHNDIGLKSTW 73
          G C+G+R N+NVF  K   +H+         F GFLP+  P+P S PSRKHNDIGL S  
Sbjct: 32 GFCNGARTNTNVFNSKPHKKHNDAVSSSTKQFLGFLPRHFPVPASGPSRKHNDIGLLSWH 91

Query: 74 RS 75
          RS
Sbjct: 92 RS 93


>AT3G18715.1 | Symbols: IDL4 | inflorescence deficient in
          abscission (IDA)-like 4 | chr3:6441067-6441348 FORWARD
          LENGTH=93
          Length = 93

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 8/57 (14%)

Query: 23 HCHGSR--NSNVFKLKHKSQH------HGHFFGFLPKRMPIPYSTPSRKHNDIGLKS 71
          HC  SR  +S+VF       H       GHF GFLP+ +P+P S PSRKHNDIG+++
Sbjct: 33 HCDASRFSSSSVFYRNPNYDHSNNTVRRGHFLGFLPRHLPVPASAPSRKHNDIGIQA 89


>AT5G09805.1 | Symbols: IDL3 | inflorescence deficient in
          abscission (IDA)-like 3 | chr5:3047218-3047517 FORWARD
          LENGTH=99
          Length = 99

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 19/68 (27%)

Query: 24 CHGSRNSNVFK-----------------LKHKSQHHG--HFFGFLPKRMPIPYSTPSRKH 64
          C+G+R +NVF                  + H+ Q H    F G LP++ P+P S PSRKH
Sbjct: 30 CNGARTTNVFNTSSPPKQKDVVSPPHDHVHHQVQDHKSVQFLGSLPRQFPVPTSGPSRKH 89

Query: 65 NDIGLKST 72
          N+IGL ST
Sbjct: 90 NEIGLSST 97