Miyakogusa Predicted Gene

Lj1g3v1276990.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1276990.1 tr|A4RYB0|A4RYB0_OSTLU PsaN, PSI-N, photosystem I
polypeptide OS=Ostreococcus lucimarinus (strain
CC,43.48,3e-17,PsaN,Photosystem I PsaN, reaction centre subunit N;
seg,NULL,CUFF.27078.1
         (167 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G64040.1 | Symbols: PSAN | photosystem I reaction center subu...   234   2e-62
AT5G64040.2 | Symbols: PSAN | photosystem I reaction center subu...   172   8e-44

>AT5G64040.1 | Symbols: PSAN | photosystem I reaction center subunit
           PSI-N, chloroplast, putative / PSI-N, putative (PSAN) |
           chr5:25628724-25629409 REVERSE LENGTH=171
          Length = 171

 Score =  234 bits (598), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 116/171 (67%), Positives = 132/171 (77%), Gaps = 4/171 (2%)

Query: 1   MAAMNSSVLACGYAISGAGCSELNSKLTSMPSLTVSGSK----LPVIKARQARVPEPKAC 56
           MAAMNSSVL C YAI+G+G  ELN K+  + S    G K    +PVIKA++    +    
Sbjct: 1   MAAMNSSVLTCSYAIAGSGSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRVVGDDVDGS 60

Query: 57  DGRRXXXXXXXXXXFSTAVSNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT 116
           +GRR          FSTA  ++SANAGVI+EYLE+SK NKELNDKKRLATSGANFARA+T
Sbjct: 61  NGRRSAMVFLAATLFSTAAVSASANAGVIDEYLERSKTNKELNDKKRLATSGANFARAFT 120

Query: 117 VQFGTCKFPENFTGCQDLAKQKKVPFISEDLELECEGKDKYKCGSNVFWKW 167
           VQFG+CKFPENFTGCQDLAKQKKVPFISED+ LECEGKDKYKCGSNVFWKW
Sbjct: 121 VQFGSCKFPENFTGCQDLAKQKKVPFISEDIALECEGKDKYKCGSNVFWKW 171


>AT5G64040.2 | Symbols: PSAN | photosystem I reaction center subunit
           PSI-N, chloroplast, putative / PSI-N, putative (PSAN) |
           chr5:25628690-25629409 REVERSE LENGTH=181
          Length = 181

 Score =  172 bits (437), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 89/142 (62%), Positives = 104/142 (73%), Gaps = 4/142 (2%)

Query: 1   MAAMNSSVLACGYAISGAGCSELNSKLTSMPSLTVSGSK----LPVIKARQARVPEPKAC 56
           MAAMNSSVL C YAI+G+G  ELN K+  + S    G K    +PVIKA++    +    
Sbjct: 1   MAAMNSSVLTCSYAIAGSGSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRVVGDDVDGS 60

Query: 57  DGRRXXXXXXXXXXFSTAVSNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT 116
           +GRR          FSTA  ++SANAGVI+EYLE+SK NKELNDKKRLATSGANFARA+T
Sbjct: 61  NGRRSAMVFLAATLFSTAAVSASANAGVIDEYLERSKTNKELNDKKRLATSGANFARAFT 120

Query: 117 VQFGTCKFPENFTGCQDLAKQK 138
           VQFG+CKFPENFTGCQDLAKQK
Sbjct: 121 VQFGSCKFPENFTGCQDLAKQK 142