Miyakogusa Predicted Gene

Lj1g3v1265880.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1265880.1 CUFF.27045.1
         (189 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G18800.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   241   2e-64

>AT3G18800.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: plasma membrane;
           EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12
           growth stages; Has 58 Blast hits to 58 proteins in 12
           species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
           0; Plants - 58; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr3:6479746-6480339 FORWARD
           LENGTH=197
          Length = 197

 Score =  241 bits (616), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 127/197 (64%), Positives = 143/197 (72%), Gaps = 8/197 (4%)

Query: 1   MADYDTHNHQ--QPTVSKETAFQALNTIIQLHFEKTLEKKRAIDLQKKELHKXXXXXXXX 58
           MADYD    Q  QP + KETA QALN+IIQLHFEKTLEKKRAID QKK+LHK        
Sbjct: 1   MADYDDEIDQNNQPFIPKETALQALNSIIQLHFEKTLEKKRAIDHQKKKLHKLFQLFFIF 60

Query: 59  XXXXXXXXSQ-SQRLQCRHCWIPITLLSLAHLIFYVSVAQTLRCINGFKYQRRCHKLTLG 117
                   SQ S RL CRHCW PI LLS +HL FYVSVAQTLRCINGFKYQRRCHKLTLG
Sbjct: 61  LAVIFFSLSQPSGRLHCRHCWAPICLLSFSHLFFYVSVAQTLRCINGFKYQRRCHKLTLG 120

Query: 118 LATEKLREMRMRLSAAAAGDVHEYDDE-----EFEIHYQEPPESYFGKFKRNWALHFGFL 172
           LAT KLR ++ R++A       + D+      + E+ YQEPP+SYFGKFKRNWAL+FGFL
Sbjct: 121 LATHKLRFIKSRIAAGDFLGGGDGDEASAAAWDLEVPYQEPPDSYFGKFKRNWALYFGFL 180

Query: 173 ILIYGFMISSSVVLLCF 189
           IL+Y FMIS SVV+LCF
Sbjct: 181 ILLYTFMISFSVVILCF 197