Miyakogusa Predicted Gene

Lj1g3v1244800.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1244800.3 tr|E9C573|E9C573_CAPO3 Gnl3l protein
OS=Capsaspora owczarzaki (strain ATCC 30864) GN=CAOG_03141
PE=4,39.34,2e-19,GTP-BINDING PROTEIN-PLANT,NULL; GTP-BINDING
PROTEIN-RELATED,NULL; coiled-coil,NULL; GN3L_Grn1,Guanin,CUFF.27075.3
         (165 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G07050.1 | Symbols:  | GTP-binding family protein | chr3:2229...   116   6e-27

>AT3G07050.1 | Symbols:  | GTP-binding family protein |
           chr3:2229602-2232279 REVERSE LENGTH=582
          Length = 582

 Score =  116 bits (291), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 65/126 (51%), Positives = 77/126 (61%), Gaps = 1/126 (0%)

Query: 39  LTLNGKKKVEKDPGIPNDWPFKEQELKALEXXXXXXIDELEQXXXXXXXXXXXXXLGLQE 98
           L L+ K +VEKDPGIPNDWPFKEQELKALE      ++E+EQ             LGL +
Sbjct: 39  LGLHRKPRVEKDPGIPNDWPFKEQELKALEVRRARALEEIEQKKEARKERAKKRKLGLVD 98

Query: 99  XXXXXXXXXXXXXXFATVGKTRDTSDRAFYKDLVKVIEASDVLLEVLDARDPLCSRFIDI 158
                            V   RD S+RAFYK+LVKVIE SDV+LEVLDARDPL +R  D+
Sbjct: 99  DEDTKTEGETIED-LPKVVNVRDNSERAFYKELVKVIELSDVILEVLDARDPLGTRCTDM 157

Query: 159 ENMVMK 164
           E MVM+
Sbjct: 158 ERMVMQ 163