Miyakogusa Predicted Gene

Lj1g3v1233770.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1233770.1 CUFF.27039.1
         (123 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G76010.1 | Symbols:  | Alba DNA/RNA-binding protein | chr1:28...   180   2e-46
AT1G20220.1 | Symbols:  | Alba DNA/RNA-binding protein | chr1:70...   177   2e-45
AT3G07030.1 | Symbols:  | Alba DNA/RNA-binding protein | chr3:22...   151   9e-38

>AT1G76010.1 | Symbols:  | Alba DNA/RNA-binding protein |
           chr1:28528505-28530488 REVERSE LENGTH=350
          Length = 350

 Score =  180 bits (456), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 92/123 (74%), Positives = 98/123 (79%)

Query: 1   MDRYQRVEKPKADSPINENEIRITSQGRMRNYITYATTLLQEKGSDEIVLKAMGRAINKT 60
           MD+YQRV KPKAD+PI+ NEIRITSQGR RNYITYA TLLQ+KGS E+V KAMGRAINKT
Sbjct: 1   MDKYQRVVKPKADTPIDANEIRITSQGRARNYITYAMTLLQDKGSTEVVFKAMGRAINKT 60

Query: 61  VMITELIKRRIVGLHQNTLIGSTDITDTWXXXXXXXXXXXTTRHVSMITINLSKKELDTS 120
           V I ELIKRRI  LHQNT IGSTDITDTW           TTRHVSMITI LSK EL+TS
Sbjct: 61  VTIVELIKRRIPDLHQNTSIGSTDITDTWEPTEEGLLPLETTRHVSMITITLSKIELNTS 120

Query: 121 STG 123
           S G
Sbjct: 121 SVG 123


>AT1G20220.1 | Symbols:  | Alba DNA/RNA-binding protein |
           chr1:7005090-7007285 REVERSE LENGTH=315
          Length = 315

 Score =  177 bits (448), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 88/123 (71%), Positives = 97/123 (78%)

Query: 1   MDRYQRVEKPKADSPINENEIRITSQGRMRNYITYATTLLQEKGSDEIVLKAMGRAINKT 60
           MD+YQRVEKPKAD+PI ENEIRITS GR RNYITYA  LLQE  S+E++ KAMGRAINK+
Sbjct: 1   MDKYQRVEKPKADTPIAENEIRITSMGRARNYITYAMALLQENKSNEVIFKAMGRAINKS 60

Query: 61  VMITELIKRRIVGLHQNTLIGSTDITDTWXXXXXXXXXXXTTRHVSMITINLSKKELDTS 120
           V I ELIKRRI GLHQ T IGSTDITDTW           TTRHVSMITI LSK++L+TS
Sbjct: 61  VTIVELIKRRIPGLHQITSIGSTDITDTWEPTEEGLQTIETTRHVSMITITLSKEQLNTS 120

Query: 121 STG 123
           S G
Sbjct: 121 SVG 123


>AT3G07030.1 | Symbols:  | Alba DNA/RNA-binding protein |
           chr3:2223001-2225254 REVERSE LENGTH=405
          Length = 405

 Score =  151 bits (382), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 75/123 (60%), Positives = 90/123 (73%)

Query: 1   MDRYQRVEKPKADSPINENEIRITSQGRMRNYITYATTLLQEKGSDEIVLKAMGRAINKT 60
           MDRYQRV KPK +SPINENEIRITS+G +RNYI+YAT+LLQEK   +IVLKAMG+AI+KT
Sbjct: 1   MDRYQRVAKPKPESPINENEIRITSKGLIRNYISYATSLLQEKSVKDIVLKAMGQAISKT 60

Query: 61  VMITELIKRRIVGLHQNTLIGSTDITDTWXXXXXXXXXXXTTRHVSMITINLSKKELDTS 120
           V I+E++K +I GLHQ+  I S  ITD W            TRHVSMI+I LS  EL+  
Sbjct: 61  VAISEILKNKIPGLHQDIAISSISITDVWEPTEEGLFPVELTRHVSMISITLSLSELNKD 120

Query: 121 STG 123
           S G
Sbjct: 121 SPG 123