Miyakogusa Predicted Gene

Lj1g3v1219090.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1219090.1 Non Chatacterized Hit- tr|G3TBZ3|G3TBZ3_LOXAF
Uncharacterized protein OS=Loxodonta africana
GN=PDCD2,27.27,2e-18,seg,NULL; PDCD2_C,Programmed cell death protein
2, C-terminal; PCDC2-RELATED,NULL; PCDC2 (PROGRAMMED,CUFF.26999.1
         (366 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G64830.2 | Symbols:  | programmed cell death 2 C-terminal dom...   181   9e-46
AT5G64830.1 | Symbols:  | programmed cell death 2 C-terminal dom...   107   2e-23
AT4G02220.1 | Symbols:  | zinc finger (MYND type) family protein...    58   1e-08

>AT5G64830.2 | Symbols:  | programmed cell death 2 C-terminal
           domain-containing protein | chr5:25914911-25916074
           REVERSE LENGTH=297
          Length = 297

 Score =  181 bits (458), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 121/260 (46%), Positives = 151/260 (58%), Gaps = 16/260 (6%)

Query: 78  PKCGTR---WRVFRVQKN-GDDVESFKHSEVQL------QNAELCEDVDEDEGEMDLAQL 127
           PKCGT    WR F +QK    +  S K +++ +      +     +D D+D+ + D A L
Sbjct: 2   PKCGTSEQSWRAFSIQKAIAKEKGSTKIADLPVAFPKTHRLDGDDDDDDDDDEDFDFASL 61

Query: 128 GKALFEAGTLAASNXXXXXXXXXXXXXXXXXXXXXXXXXXXLVCDDNHIDM---PVVPCF 184
            KAL EA + AAS                             V  ++HI +    VVPCF
Sbjct: 62  AKALAEASSAAASITKKQKSKPSGNASSGTKAKPSPLKSETRV--EDHIKLETGAVVPCF 119

Query: 185 YMYTQEEPSTGDLSSICSNYASLSIKENKSDVEDHSEPEESWEKERYEYDKALTADRTYL 244
           Y+YT+EE  + ++     NY+SLSIK+  +   D SE EE WE E+YEYDKAL ADRTYL
Sbjct: 120 YIYTKEEIPSKEVDRFSQNYSSLSIKDKGTGNNDESESEEKWEDEKYEYDKALNADRTYL 179

Query: 245 KFKKRLDAYPEQCFRYAYGGKPILAAADEINPGSCTLCGRPRQFEMQLMPPLLYFLQEA- 303
           KFKKRLDA PEQCFRY YGGKPILA  D  +P  C  C   R FE+QLMPPL+YFL E  
Sbjct: 180 KFKKRLDANPEQCFRYWYGGKPILATEDMKSPDKCRNCDSQRHFEIQLMPPLIYFLHEGV 239

Query: 304 VDEDQRQMLENWDWMTLIVY 323
           VD+  +Q L+NWDWMTLIVY
Sbjct: 240 VDKGIKQSLDNWDWMTLIVY 259


>AT5G64830.1 | Symbols:  | programmed cell death 2 C-terminal
           domain-containing protein | chr5:25914911-25916512
           REVERSE LENGTH=380
          Length = 380

 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 55/99 (55%), Positives = 65/99 (65%), Gaps = 11/99 (11%)

Query: 4   AVLLGMPGPWADDYREPSDPYTTKIGGLPDW-PIP---INGDLLRCGGCDCTLCLVAQVY 59
            +LLG+PG WA+D  EPSD YTTKIGGLPDW PIP   +  +LL C  C   L LVAQVY
Sbjct: 3   GILLGLPGKWAEDELEPSDHYTTKIGGLPDWPPIPDDALKPELLNCCSCGSKLSLVAQVY 62

Query: 60  APLPSS----QHRALFVLGCLSPKCGT---RWRVFRVQK 91
           AP+ +     Q R L++ GCL PKCGT    WR F +QK
Sbjct: 63  APISTEILDIQERTLYIFGCLMPKCGTSEQSWRAFSIQK 101


>AT4G02220.1 | Symbols:  | zinc finger (MYND type) family protein /
           programmed cell death 2 C-terminal domain-containing
           protein | chr4:976728-978902 FORWARD LENGTH=418
          Length = 418

 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 12/89 (13%)

Query: 241 RTYLKFKKRLDAYPEQCFRYAY--GGKPIL-AAADEINPG---SCTLCGRPRQFEMQLMP 294
           + ++ F++R+D  PEQ  RY+   G KP+   A+  ++     SC  CG PR FE Q+MP
Sbjct: 310 KNWVNFQQRVDKAPEQVLRYSRSSGAKPLWPIASGRVSKSELPSCKSCGGPRCFEFQVMP 369

Query: 295 PLLYFLQEAVDEDQRQMLENWDWMTLIVY 323
            LL+F      +++R+ L   DW T++VY
Sbjct: 370 QLLFFFG---GKNERESL---DWATIVVY 392