Miyakogusa Predicted Gene

Lj1g3v1219020.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1219020.1 Non Chatacterized Hit- tr|I3SBT6|I3SBT6_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=4
SV,68.06,2e-19,AvrRpt-cleavage,Pathogenic type III effector avirulence
factor Avr cleavage site; seg,NULL,CUFF.26997.1
         (102 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G09960.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   122   6e-29
AT5G64850.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   106   3e-24
AT5G19473.1 | Symbols:  | RPM1-interacting protein 4 (RIN4) fami...    67   2e-12

>AT5G09960.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           plasma membrane; EXPRESSED IN: 22 plant structures;
           EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
           DOMAIN/s: RPM1-interacting protein 4, defence response
           (InterPro:IPR008700); BEST Arabidopsis thaliana protein
           match is: unknown protein (TAIR:AT5G64850.1); Has 30201
           Blast hits to 17322 proteins in 780 species: Archae -
           12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
           Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
           (source: NCBI BLink). | chr5:3106503-3107658 FORWARD
           LENGTH=112
          Length = 112

 Score =  122 bits (305), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 65/110 (59%), Positives = 75/110 (68%), Gaps = 9/110 (8%)

Query: 2   DQSKEKNAPWLSVPQFGDWDQKG--PLPDYSMDFSKIREMRKQNKTNISRASLGNXXXX- 58
           D  KEKN PWLSVPQFGDWDQKG   +PDYSMDF+KIREMRKQNK + SRASLGN     
Sbjct: 3   DDRKEKNTPWLSVPQFGDWDQKGGGTMPDYSMDFTKIREMRKQNKRDPSRASLGNEEELI 62

Query: 59  ---XXXXXXXXINTGHTEPQQH---SNYHQANSPTTRRSFFSYFNCCVKA 102
                      + T  +E Q+    S++HQ +SP+TRRS FS FNCCVKA
Sbjct: 63  KPPESATSTAELTTVQSENQREFSPSHHHQPHSPSTRRSMFSCFNCCVKA 112


>AT5G64850.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           plasma membrane; EXPRESSED IN: 22 plant structures;
           EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
           DOMAIN/s: RPM1-interacting protein 4, defence response
           (InterPro:IPR008700); BEST Arabidopsis thaliana protein
           match is: unknown protein (TAIR:AT5G09960.1); Has 30201
           Blast hits to 17322 proteins in 780 species: Archae -
           12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
           Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
           (source: NCBI BLink). | chr5:25921585-25923038 FORWARD
           LENGTH=114
          Length = 114

 Score =  106 bits (264), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 57/112 (50%), Positives = 68/112 (60%), Gaps = 11/112 (9%)

Query: 2   DQSKEKNAPWLSVPQFGDWDQKGPLPDYSMDFSKIREMRKQNKTNISRASLGNXXXX--- 58
           D+ + KN+PWLSVPQFGDWDQKG   DYSMDFSKIREMRK NK + SRASLGN       
Sbjct: 3   DRKENKNSPWLSVPQFGDWDQKGGSIDYSMDFSKIREMRKLNKRDASRASLGNEEELINP 62

Query: 59  ------XXXXXXXXINTGHTEPQQHSNY--HQANSPTTRRSFFSYFNCCVKA 102
                         + T H++    + +  H  +SP+ RR  FS FNCCVKA
Sbjct: 63  FHDQPPVDTAKPKKLTTVHSDNNNRNEFSHHHPHSPSRRRRIFSCFNCCVKA 114


>AT5G19473.1 | Symbols:  | RPM1-interacting protein 4 (RIN4) family
           protein | chr5:6569268-6570680 FORWARD LENGTH=99
          Length = 99

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 10/104 (9%)

Query: 1   MDQSKEKNAPWLSVPQFGDWDQKGP--LPDYSMDFSKIREMRKQNKTNISRASLGNXXXX 58
           MD+ +E NA W  VPQFG WDQKGP    +YS+ FSK R  RKQNK  +  +SLG+    
Sbjct: 1   MDKRRE-NAAWTPVPQFGGWDQKGPNDATNYSVVFSKARANRKQNKAGVRHSSLGS---- 55

Query: 59  XXXXXXXXINTGHTEPQQHSNYHQANSPTTRRS-FFSYFNCCVK 101
                   +   H +   H +  Q + P  ++    +Y NCC++
Sbjct: 56  -EQELMVSVRRNHQQ-LHHRHETQDDDPVMKKKRILTYINCCIR 97