Miyakogusa Predicted Gene

Lj1g3v1182090.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1182090.1 tr|Q56VR0|Q56VR0_LOTJA Superoxide dismutase
OS=Lotus japonicus GN=sodA PE=3 SV=1,99.19,0,SOD_MN,Manganese/iron
superoxide dismutase, binding site; seg,NULL; SUPEROXIDE DISMUTASE
[MN],NULL; ,CUFF.27026.1
         (246 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G10920.1 | Symbols: MSD1, MEE33, ATMSD1 | manganese superoxid...   365   e-101
AT3G10920.2 | Symbols: MSD1 | manganese superoxide dismutase 1 |...   359   e-99 
AT3G56350.1 | Symbols:  | Iron/manganese superoxide dismutase fa...   313   5e-86
AT5G23310.1 | Symbols: FSD3 | Fe superoxide dismutase 3 | chr5:7...   109   2e-24
AT5G51100.1 | Symbols: FSD2 | Fe superoxide dismutase 2 | chr5:2...   106   2e-23
AT4G25100.5 | Symbols: FSD1 | Fe superoxide dismutase 1 | chr4:1...    91   7e-19
AT4G25100.2 | Symbols: FSD1 | Fe superoxide dismutase 1 | chr4:1...    91   7e-19
AT4G25100.3 | Symbols: FSD1 | Fe superoxide dismutase 1 | chr4:1...    91   7e-19
AT4G25100.1 | Symbols: FSD1, ATFSD1 | Fe superoxide dismutase 1 ...    91   7e-19
AT4G25100.4 | Symbols: FSD1 | Fe superoxide dismutase 1 | chr4:1...    83   2e-16

>AT3G10920.1 | Symbols: MSD1, MEE33, ATMSD1 | manganese superoxide
           dismutase 1 | chr3:3418015-3419581 FORWARD LENGTH=231
          Length = 231

 Score =  365 bits (938), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 182/251 (72%), Positives = 196/251 (78%), Gaps = 26/251 (10%)

Query: 1   MAVRTLLSRKTLA------SVLLRNDIXXXXXXXXXXXXXXQTHSRGIHALTLPDLGYDY 54
           MA+R + SRKTLA      S LLR                     RGI   TLPDL YDY
Sbjct: 1   MAIRCVASRKTLAGLKETSSRLLR--------------------IRGIQTFTLPDLPYDY 40

Query: 55  GALEPVISGEIMQIHHQKHHQTYITNYNKALEQLQDAIAKSDSSAVVKLQSAIKFNGGGH 114
           GALEP ISGEIMQIHHQKHHQ Y+TNYN ALEQL  A+ K D+S VVKLQSAIKFNGGGH
Sbjct: 41  GALEPAISGEIMQIHHQKHHQAYVTNYNNALEQLDQAVNKGDASTVVKLQSAIKFNGGGH 100

Query: 115 VNHSIFWKNLAPPREGGGESPHGSLGWAIDTHFGSFEALIKKVNAEGAALQGSGWVWLGL 174
           VNHSIFWKNLAP  EGGGE P GSLG AID HFGS E L+KK++AEGAA+QGSGWVWLGL
Sbjct: 101 VNHSIFWKNLAPSSEGGGEPPKGSLGSAIDAHFGSLEGLVKKMSAEGAAVQGSGWVWLGL 160

Query: 175 DKEFNKLVVETTANQDPLVTKGSSLVPLFGIDVWEHAYYLQYKNVRPDYLKNIWKVINWK 234
           DKE  KLVV+TTANQDPLVTKG SLVPL GIDVWEHAYYLQYKNVRP+YLKN+WKVINWK
Sbjct: 161 DKELKKLVVDTTANQDPLVTKGGSLVPLVGIDVWEHAYYLQYKNVRPEYLKNVWKVINWK 220

Query: 235 YVSEVYEKESS 245
           Y SEVYEKE++
Sbjct: 221 YASEVYEKENN 231


>AT3G10920.2 | Symbols: MSD1 | manganese superoxide dismutase 1 |
           chr3:3418015-3419581 FORWARD LENGTH=230
          Length = 230

 Score =  359 bits (921), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 181/251 (72%), Positives = 195/251 (77%), Gaps = 27/251 (10%)

Query: 1   MAVRTLLSRKTLA------SVLLRNDIXXXXXXXXXXXXXXQTHSRGIHALTLPDLGYDY 54
           MA+R + SRKTLA      S LLR                     RGI   TLPDL YDY
Sbjct: 1   MAIRCVASRKTLAGLKETSSRLLR--------------------IRGIQTFTLPDLPYDY 40

Query: 55  GALEPVISGEIMQIHHQKHHQTYITNYNKALEQLQDAIAKSDSSAVVKLQSAIKFNGGGH 114
           GALEP ISGEIMQIHHQKHHQ Y+TNYN ALEQL  A+ K D+S VVKLQSAIKFNGGGH
Sbjct: 41  GALEPAISGEIMQIHHQKHHQAYVTNYNNALEQLDQAVNKGDASTVVKLQSAIKFNGGGH 100

Query: 115 VNHSIFWKNLAPPREGGGESPHGSLGWAIDTHFGSFEALIKKVNAEGAALQGSGWVWLGL 174
           VNHSIFWKNLAP  EGGGE P GSLG AID HFGS E L+KK++AEGAA+QGSGW WLGL
Sbjct: 101 VNHSIFWKNLAPSSEGGGEPPKGSLGSAIDAHFGSLEGLVKKMSAEGAAVQGSGW-WLGL 159

Query: 175 DKEFNKLVVETTANQDPLVTKGSSLVPLFGIDVWEHAYYLQYKNVRPDYLKNIWKVINWK 234
           DKE  KLVV+TTANQDPLVTKG SLVPL GIDVWEHAYYLQYKNVRP+YLKN+WKVINWK
Sbjct: 160 DKELKKLVVDTTANQDPLVTKGGSLVPLVGIDVWEHAYYLQYKNVRPEYLKNVWKVINWK 219

Query: 235 YVSEVYEKESS 245
           Y SEVYEKE++
Sbjct: 220 YASEVYEKENN 230


>AT3G56350.1 | Symbols:  | Iron/manganese superoxide dismutase
           family protein | chr3:20894155-20895625 REVERSE
           LENGTH=241
          Length = 241

 Score =  313 bits (803), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 146/199 (73%), Positives = 165/199 (82%)

Query: 46  TLPDLGYDYGALEPVISGEIMQIHHQKHHQTYITNYNKALEQLQDAIAKSDSSAVVKLQS 105
           +LPDL Y Y ALEP IS EIM++HHQKHHQTY+T YNKAL  L+ A+A  D S+VVKLQS
Sbjct: 37  SLPDLPYAYDALEPAISEEIMRLHHQKHHQTYVTQYNKALNSLRSAMADGDHSSVVKLQS 96

Query: 106 AIKFNGGGHVNHSIFWKNLAPPREGGGESPHGSLGWAIDTHFGSFEALIKKVNAEGAALQ 165
            IKFNGGGHVNH+IFWKNLAP  EGGG+ PH  L  AID HFGS E LI+K+NAEGAA+Q
Sbjct: 97  LIKFNGGGHVNHAIFWKNLAPVHEGGGKPPHDPLASAIDAHFGSLEGLIQKMNAEGAAVQ 156

Query: 166 GSGWVWLGLDKEFNKLVVETTANQDPLVTKGSSLVPLFGIDVWEHAYYLQYKNVRPDYLK 225
           GSGWVW GLD+E  +LVVETTANQDPLVTKGS LVPL GIDVWEHAYY QYKN R +YLK
Sbjct: 157 GSGWVWFGLDRELKRLVVETTANQDPLVTKGSHLVPLIGIDVWEHAYYPQYKNARAEYLK 216

Query: 226 NIWKVINWKYVSEVYEKES 244
           NIW VINWKY ++V+EK +
Sbjct: 217 NIWTVINWKYAADVFEKHT 235


>AT5G23310.1 | Symbols: FSD3 | Fe superoxide dismutase 3 |
           chr5:7850624-7852241 FORWARD LENGTH=263
          Length = 263

 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/186 (36%), Positives = 92/186 (49%), Gaps = 26/186 (13%)

Query: 52  YDYGALEPVISGEIMQIHHQKHHQTYITNYNKALEQLQDAIAKSDSSAVVKLQSAIK--- 108
           Y   ALEP +S   +++H  KHH+ Y+ N NK L        K D      ++  IK   
Sbjct: 57  YPLDALEPYMSRRTLEVHWGKHHRGYVDNLNKQL-------GKDDRLYGYTMEELIKATY 109

Query: 109 --------FNGGGHV-NHSIFWKNLAPPREGGGESPHGSLGWAIDTHFGSFEALIKKVNA 159
                   FN    V NH  FW+++ P   GGG++P   +   ID  FGSF    +K   
Sbjct: 110 NNGNPLPEFNNAAQVYNHDFFWESMQP---GGGDTPQKGVLEQIDKDFGSFTNFREKFTN 166

Query: 160 EGAALQGSGWVWLGLDKEFNKLVVETTANQ-DPLVTKGSSLVPLFGIDVWEHAYYLQYKN 218
                 GSGWVWL L +E  +L V  T+N  +PLV      +P+  +DVWEH+YYL YKN
Sbjct: 167 AALTQFGSGWVWLVLKREERRLEVVKTSNAINPLVWDD---IPIICVDVWEHSYYLDYKN 223

Query: 219 VRPDYL 224
            R  Y+
Sbjct: 224 DRAKYI 229


>AT5G51100.1 | Symbols: FSD2 | Fe superoxide dismutase 2 |
           chr5:20773357-20775635 REVERSE LENGTH=305
          Length = 305

 Score =  106 bits (264), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/212 (36%), Positives = 104/212 (49%), Gaps = 29/212 (13%)

Query: 52  YDYGALEPVISGEIMQIHHQKHHQTYITNYNKALEQLQDAIAKSDSSAVV----KLQSAI 107
           Y   ALEP +S E +  H  KHH+TY+ N NK +    D  A S    V+    K     
Sbjct: 60  YPLDALEPHMSRETLDYHWGKHHKTYVENLNKQILG-TDLDALSLEEVVLLSYNKGNMLP 118

Query: 108 KFNGGGHV-NHSIFWKNLAPPREGGGESPHGSLGWAIDTHFGSFEALIKKVNAEGAALQG 166
            FN      NH  FW+++ P   GGG  P G L   I+  FGSFE  +++  +  A+  G
Sbjct: 119 AFNNAAQAWNHEFFWESIQP---GGGGKPTGELLRLIERDFGSFEEFLERFKSAAASNFG 175

Query: 167 SGWVWLG-----LD----------KEFNKLVVETTANQ-DPLVTKGSSLVPLFGIDVWEH 210
           SGW WL      LD          +E  KLV+  T N  +PLV   S   PL  ID WEH
Sbjct: 176 SGWTWLAYKANRLDVANAVNPLPKEEDKKLVIVKTPNAVNPLVWDYS---PLLTIDTWEH 232

Query: 211 AYYLQYKNVRPDYLKNIW-KVINWKYVSEVYE 241
           AYYL ++N R +Y+     K+++W+ VS   E
Sbjct: 233 AYYLDFENRRAEYINTFMEKLVSWETVSTRLE 264


>AT4G25100.5 | Symbols: FSD1 | Fe superoxide dismutase 1 |
           chr4:12884649-12886501 REVERSE LENGTH=212
          Length = 212

 Score = 90.9 bits (224), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 71/212 (33%), Positives = 104/212 (49%), Gaps = 20/212 (9%)

Query: 43  HALTLPDLGYDYGALEPVISGEIMQIHHQKHHQTYITNYNKAL-------EQLQDAIAKS 95
           + L  P    D  ALEP +S + ++ H  KHH+ Y+ N  K +       + L+  I  +
Sbjct: 11  YVLKPPPFALD--ALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLEHIIHST 68

Query: 96  DSSAVVKLQSAIKFNGGGHVNHSIFWKNLAPPREGGGESPHGSLGWAIDTHFGSFEALIK 155
            ++    L  A   N     NH  FW+++ P   G       +L   ++  F S+E   +
Sbjct: 69  YNNG--DLLPAFN-NAAQAWNHEFFWESMKPGGGGKPSGELLAL---LERDFTSYEKFYE 122

Query: 156 KVNAEGAALQGSGWVWLGLDKEFNKLVVETTANQDPLVTKGSSLVPLFGIDVWEHAYYLQ 215
           + NA  A   G+GW WL    E  K VV+T    +PLV  GS   PL  IDVWEHAYYL 
Sbjct: 123 EFNAAAATQFGAGWAWLAYSNEKLK-VVKTPNAVNPLVL-GS--FPLLTIDVWEHAYYLD 178

Query: 216 YKNVRPDYLKNIW-KVINWKYVSEVYEKESSA 246
           ++N RPDY+K     +++W+ VS   E   +A
Sbjct: 179 FQNRRPDYIKTFMTNLVSWEAVSARLEAAKAA 210


>AT4G25100.2 | Symbols: FSD1 | Fe superoxide dismutase 1 |
           chr4:12884649-12886501 REVERSE LENGTH=212
          Length = 212

 Score = 90.9 bits (224), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 71/212 (33%), Positives = 104/212 (49%), Gaps = 20/212 (9%)

Query: 43  HALTLPDLGYDYGALEPVISGEIMQIHHQKHHQTYITNYNKAL-------EQLQDAIAKS 95
           + L  P    D  ALEP +S + ++ H  KHH+ Y+ N  K +       + L+  I  +
Sbjct: 11  YVLKPPPFALD--ALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLEHIIHST 68

Query: 96  DSSAVVKLQSAIKFNGGGHVNHSIFWKNLAPPREGGGESPHGSLGWAIDTHFGSFEALIK 155
            ++    L  A   N     NH  FW+++ P   G       +L   ++  F S+E   +
Sbjct: 69  YNNG--DLLPAFN-NAAQAWNHEFFWESMKPGGGGKPSGELLAL---LERDFTSYEKFYE 122

Query: 156 KVNAEGAALQGSGWVWLGLDKEFNKLVVETTANQDPLVTKGSSLVPLFGIDVWEHAYYLQ 215
           + NA  A   G+GW WL    E  K VV+T    +PLV  GS   PL  IDVWEHAYYL 
Sbjct: 123 EFNAAAATQFGAGWAWLAYSNEKLK-VVKTPNAVNPLVL-GS--FPLLTIDVWEHAYYLD 178

Query: 216 YKNVRPDYLKNIW-KVINWKYVSEVYEKESSA 246
           ++N RPDY+K     +++W+ VS   E   +A
Sbjct: 179 FQNRRPDYIKTFMTNLVSWEAVSARLEAAKAA 210


>AT4G25100.3 | Symbols: FSD1 | Fe superoxide dismutase 1 |
           chr4:12884649-12886501 REVERSE LENGTH=212
          Length = 212

 Score = 90.9 bits (224), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 71/212 (33%), Positives = 104/212 (49%), Gaps = 20/212 (9%)

Query: 43  HALTLPDLGYDYGALEPVISGEIMQIHHQKHHQTYITNYNKAL-------EQLQDAIAKS 95
           + L  P    D  ALEP +S + ++ H  KHH+ Y+ N  K +       + L+  I  +
Sbjct: 11  YVLKPPPFALD--ALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLEHIIHST 68

Query: 96  DSSAVVKLQSAIKFNGGGHVNHSIFWKNLAPPREGGGESPHGSLGWAIDTHFGSFEALIK 155
            ++    L  A   N     NH  FW+++ P   G       +L   ++  F S+E   +
Sbjct: 69  YNNG--DLLPAFN-NAAQAWNHEFFWESMKPGGGGKPSGELLAL---LERDFTSYEKFYE 122

Query: 156 KVNAEGAALQGSGWVWLGLDKEFNKLVVETTANQDPLVTKGSSLVPLFGIDVWEHAYYLQ 215
           + NA  A   G+GW WL    E  K VV+T    +PLV  GS   PL  IDVWEHAYYL 
Sbjct: 123 EFNAAAATQFGAGWAWLAYSNEKLK-VVKTPNAVNPLVL-GS--FPLLTIDVWEHAYYLD 178

Query: 216 YKNVRPDYLKNIW-KVINWKYVSEVYEKESSA 246
           ++N RPDY+K     +++W+ VS   E   +A
Sbjct: 179 FQNRRPDYIKTFMTNLVSWEAVSARLEAAKAA 210


>AT4G25100.1 | Symbols: FSD1, ATFSD1 | Fe superoxide dismutase 1 |
           chr4:12884649-12886501 REVERSE LENGTH=212
          Length = 212

 Score = 90.9 bits (224), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 71/212 (33%), Positives = 104/212 (49%), Gaps = 20/212 (9%)

Query: 43  HALTLPDLGYDYGALEPVISGEIMQIHHQKHHQTYITNYNKAL-------EQLQDAIAKS 95
           + L  P    D  ALEP +S + ++ H  KHH+ Y+ N  K +       + L+  I  +
Sbjct: 11  YVLKPPPFALD--ALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLEHIIHST 68

Query: 96  DSSAVVKLQSAIKFNGGGHVNHSIFWKNLAPPREGGGESPHGSLGWAIDTHFGSFEALIK 155
            ++    L  A   N     NH  FW+++ P   G       +L   ++  F S+E   +
Sbjct: 69  YNNG--DLLPAFN-NAAQAWNHEFFWESMKPGGGGKPSGELLAL---LERDFTSYEKFYE 122

Query: 156 KVNAEGAALQGSGWVWLGLDKEFNKLVVETTANQDPLVTKGSSLVPLFGIDVWEHAYYLQ 215
           + NA  A   G+GW WL    E  K VV+T    +PLV  GS   PL  IDVWEHAYYL 
Sbjct: 123 EFNAAAATQFGAGWAWLAYSNEKLK-VVKTPNAVNPLVL-GS--FPLLTIDVWEHAYYLD 178

Query: 216 YKNVRPDYLKNIW-KVINWKYVSEVYEKESSA 246
           ++N RPDY+K     +++W+ VS   E   +A
Sbjct: 179 FQNRRPDYIKTFMTNLVSWEAVSARLEAAKAA 210


>AT4G25100.4 | Symbols: FSD1 | Fe superoxide dismutase 1 |
           chr4:12884649-12885660 REVERSE LENGTH=186
          Length = 186

 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/194 (32%), Positives = 96/194 (49%), Gaps = 18/194 (9%)

Query: 61  ISGEIMQIHHQKHHQTYITNYNKAL-------EQLQDAIAKSDSSAVVKLQSAIKFNGGG 113
           +S + ++ H  KHH+ Y+ N  K +       + L+  I  + ++    L  A   N   
Sbjct: 1   MSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLEHIIHSTYNNG--DLLPAFN-NAAQ 57

Query: 114 HVNHSIFWKNLAPPREGGGESPHGSLGWAIDTHFGSFEALIKKVNAEGAALQGSGWVWLG 173
             NH  FW+++ P   G       +L   ++  F S+E   ++ NA  A   G+GW WL 
Sbjct: 58  AWNHEFFWESMKPGGGGKPSGELLAL---LERDFTSYEKFYEEFNAAAATQFGAGWAWLA 114

Query: 174 LDKEFNKLVVETTANQDPLVTKGSSLVPLFGIDVWEHAYYLQYKNVRPDYLKNIW-KVIN 232
              E  K VV+T    +PLV  GS   PL  IDVWEHAYYL ++N RPDY+K     +++
Sbjct: 115 YSNEKLK-VVKTPNAVNPLVL-GS--FPLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVS 170

Query: 233 WKYVSEVYEKESSA 246
           W+ VS   E   +A
Sbjct: 171 WEAVSARLEAAKAA 184