Miyakogusa Predicted Gene

Lj1g3v1181990.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1181990.1 Non Chatacterized Hit- tr|J3N552|J3N552_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB10G2,47.89,0.000000000000006,SUBFAMILY NOT NAMED,NULL;
NONSENSE-MEDIATED MRNA DECAY PROTEIN 3,NULL; seg,NULL;
NMD3,NMD3,CUFF.26918.1
         (522 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G03820.1 | Symbols:  | nonsense-mediated mRNA decay NMD3 fami...   612   e-175

>AT2G03820.1 | Symbols:  | nonsense-mediated mRNA decay NMD3 family
           protein | chr2:1165149-1166699 REVERSE LENGTH=516
          Length = 516

 Score =  612 bits (1579), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 300/489 (61%), Positives = 374/489 (76%), Gaps = 16/489 (3%)

Query: 10  EAGMFSVPQTICNILCCICGIPMQPNAANMCVKCLSSQEDITEGLQKQIKIYHCPECESY 69
           E+GMF+V QTI ++LCC CG+PM PNAANMCV CL S+ DITEGLQK I+I++CPEC  Y
Sbjct: 6   ESGMFNVQQTIGSVLCCKCGVPMAPNAANMCVNCLRSEVDITEGLQKSIQIFYCPECTCY 65

Query: 70  LQQQPKTWIKYLRLESDELLKFCLNMLKKKLSTNKVRVVDARFIWTEPHSKRIKVNVKVQ 129
           LQ  PKTWIK  + ES ELL FC+  LK   + NKV++ +A F+WTEPHSKRIKV + VQ
Sbjct: 66  LQP-PKTWIK-CQWESKELLTFCIKRLK---NLNKVKLKNAEFVWTEPHSKRIKVKLTVQ 120

Query: 130 KEVLNGVILEQSYLVEYVQLEHLCDSCTRLAANPDQWVAVVQLRQHVSHRRTFFYLEQLI 189
            EVLNG +LEQSY VEY   ++LC+SC+R  ANPDQWVA +QLRQHVSHRRTFFYLEQLI
Sbjct: 121 AEVLNGAVLEQSYPVEYTVRDNLCESCSRFQANPDQWVASIQLRQHVSHRRTFFYLEQLI 180

Query: 190 LKHGVAATAIRIKQMDEGIDFYFSNKSHGNKFVQFIQKVAPIRSNGDNRQLVSHDTKSNT 249
           L+H  A+ AIRI+Q+D+GIDF+F NKSH N FV+F++KV PI    D +QLVSHD KS+ 
Sbjct: 181 LRHDAASRAIRIQQVDQGIDFFFGNKSHANSFVEFLRKVVPIEYRQD-QQLVSHDVKSSL 239

Query: 250 YNYRYTYSVEISPICREDLICLPHHVALSLGNIGPLVICTKVTNSIVLLDPFTLRHCSLD 309
           YNY+YTYSV+I P+CREDL+CLP  VA  LGN+GPLV+CTKV+++I LLDP TLR   LD
Sbjct: 240 YNYKYTYSVKICPVCREDLVCLPSKVASGLGNLGPLVVCTKVSDNITLLDPRTLRCAFLD 299

Query: 310 ANQYWGASFKSLLTSRQLXXXXXXXXXXXXXXXXXXXGGTKYALAVVEVARVSDFGKNDT 369
           A QYW + F+S LTSRQL                   GG KYAL+ V++AR SD GK   
Sbjct: 300 ARQYWRSGFRSALTSRQL--VKYFVFDVEPPVGEATVGGQKYALSYVQIARESDIGK--- 354

Query: 370 IFSIKTHLGHLLNPGDYALGYDLYGANCNNIELDIY----KGDLPHAILVKKSYEEKRLK 425
           +F ++THLGH+L PGD ALGYD+YGAN N+ E++ Y    K  LP AIL+KK YEE+R +
Sbjct: 355 MFYVQTHLGHILKPGDQALGYDIYGANVNDNEMEKYRLSVKNGLPEAILIKKCYEEQRER 414

Query: 426 KRGKPRSWKLKSLNMEVDD-KGRIDPDKMNSEYEQFLNDLEENPDLRFNLSLYQNIEFQP 484
           K+ K R+WKLKSL ME+DD +GR+DP+K + EYE+FL DLEENP+LRFN+SLY++ ++Q 
Sbjct: 415 KQKKSRNWKLKSLPMEMDDSRGRVDPEKTDKEYEEFLRDLEENPELRFNISLYRDKDYQA 474

Query: 485 SEMASVTDG 493
           SE AS+TDG
Sbjct: 475 SETASMTDG 483