Miyakogusa Predicted Gene

Lj1g3v1180830.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1180830.1 Non Chatacterized Hit- tr|F4YFH3|F4YFH3_CAMSI
Putative uncharacterized protein (Fragment)
OS=Camelli,52.94,0.0000000000002,seg,NULL,CUFF.26906.1
         (179 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G56290.1 | Symbols:  | unknown protein; Has 39 Blast hits to ...   175   2e-44

>AT3G56290.1 | Symbols:  | unknown protein; Has 39 Blast hits to 39
           proteins in 15 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr3:20878743-20879541 REVERSE LENGTH=173
          Length = 173

 Score =  175 bits (443), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 94/180 (52%), Positives = 110/180 (61%), Gaps = 16/180 (8%)

Query: 9   MGLGTLPLTPSYRSFPSNSGLVQSTNHSMVN---------RSIKFSVSAXXXXXXXXXXX 59
           MG   LPL  S       SG + +T  S+           R +  S              
Sbjct: 1   MGFRALPLQHS-------SGFISTTKVSISRTSPRIFRNPRWVVVSAKQEKDEDKKKNEE 53

Query: 60  XXSLFSSVTEALDFSQVRSAEDAQLIDEAREATTSGERMSREQYGALRRKIGGTYKDFFK 119
             SLF+ +T+ALDFSQVRS +DA+L+ EAREAT SG +M++EQYGALRRKIGGTYKDFFK
Sbjct: 54  ETSLFTQLTDALDFSQVRSEKDAELLYEAREATKSGRKMTQEQYGALRRKIGGTYKDFFK 113

Query: 120 SYVEVDGAYVEEGWXXXXXXXXXXXXXGEARQVDNLGRYVHVACLEKSKTGNFFTRLFSR 179
           SYVEVDG YVEEGW             GEARQVD LGRY HV+CL+   +GNFFTRLFSR
Sbjct: 114 SYVEVDGQYVEEGWVDKTCKICKKDTKGEARQVDKLGRYAHVSCLQNPPSGNFFTRLFSR 173