Miyakogusa Predicted Gene

Lj1g3v1147570.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1147570.1 tr|Q8LPR2|Q8LPR2_ARATH At3g19895 OS=Arabidopsis
thaliana PE=2 SV=1,41.67,0.0000000000002,RING/U-box,NULL; no
description,Zinc finger, RING/FYVE/PHD-type; seg,NULL,CUFF.26891.1
         (406 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G05230.1 | Symbols:  | RING/U-box superfamily protein | chr5:...   286   2e-77
AT2G40640.1 | Symbols:  | RING/U-box superfamily protein | chr2:...   231   5e-61
AT2G40640.2 | Symbols:  | RING/U-box superfamily protein | chr2:...   189   2e-48
AT3G19895.1 | Symbols:  | RING/U-box superfamily protein | chr3:...   169   4e-42
AT2G40640.3 | Symbols:  | RING/U-box superfamily protein | chr2:...   122   5e-28

>AT5G05230.1 | Symbols:  | RING/U-box superfamily protein |
           chr5:1551593-1553543 FORWARD LENGTH=363
          Length = 363

 Score =  286 bits (732), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 149/242 (61%), Positives = 177/242 (73%), Gaps = 7/242 (2%)

Query: 172 SQGSVSVAETDCEEYYSQFLHGTEGSA---SVQKAMVDDNGCGFSGRKDVMFSTESGES- 227
           S G+V V   D   YYSQ     E S    + + ++  DNGC FSGR+D+  S+ +    
Sbjct: 122 SAGAVIVVGQDNAAYYSQHFKTVEASFVSRNEESSIAADNGCDFSGRRDLSSSSSNSIES 181

Query: 228 LRAILSDPVTGALMEDAMILPCGHSFGGGGIQHVTRMKACCTCSQPVSEESISPNLSLQA 287
           LR ILSDP TG+LM DAMILPCGH+FG GGI+ V +MKACCTCSQPVSE+SI+PNL+L+ 
Sbjct: 182 LRTILSDPTTGSLMADAMILPCGHTFGAGGIEQVKQMKACCTCSQPVSEDSITPNLTLRV 241

Query: 288 AVQAYRREEESQFYRSSKRRRERLDQG--GFGDSPVMESSRSRGVQFPFAVMDRVVIKGN 345
           AVQA+ REE SQ    SKR+RE  DQ    FG +     SR++   FPFAV DRV+IKGN
Sbjct: 242 AVQAFCREENSQSNHPSKRKREGFDQERRAFGVTNHSGRSRNKSNHFPFAVADRVIIKGN 301

Query: 346 KRTPPRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVLDDPSKPAS-SKMVPN 404
           KRTPPRFVGREA+VTTQCLNGWYVVKTLDNAESVKLQYRSLAK  +DPS  A+ +KMV N
Sbjct: 302 KRTPPRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAKAPEDPSAKATPNKMVSN 361

Query: 405 WV 406
           W+
Sbjct: 362 WL 363


>AT2G40640.1 | Symbols:  | RING/U-box superfamily protein |
           chr2:16961323-16963198 REVERSE LENGTH=383
          Length = 383

 Score =  231 bits (590), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 113/189 (59%), Positives = 144/189 (76%), Gaps = 3/189 (1%)

Query: 221 STESGESLRAILSDPVTGALMEDAMILPCGHSFGGGGIQHVTRMKACCTCSQPVSEESIS 280
           S  S ESL+AILSDPVTGALM DA ILPCGHSFG GG++ V +MKAC TCSQP  E S  
Sbjct: 195 SVSSWESLKAILSDPVTGALMNDATILPCGHSFGAGGLKEVKKMKACFTCSQPTLEGSEK 254

Query: 281 PNLSLQAAVQAYRREEESQFYRSSKRRRERLDQG-GFGDSPVMESSR-SRGVQFPFAVMD 338
           PNLSL+  V A+R+EE+S    + KRR+ER DQ   F    + E+ + SRG+QFPF++ D
Sbjct: 255 PNLSLRIVVHAFRQEEDSDHIHTLKRRKERSDQKRSFCIPNITETPKSSRGIQFPFSIGD 314

Query: 339 RVVIKGNKRTPPRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVLDDPS-KPA 397
            ++I+GNKRTPPRFVGR A++ TQCLNGWYVVKT+DN+ES+KLQ+ SLAK+ D+ S K  
Sbjct: 315 HIIIEGNKRTPPRFVGRIAVIMTQCLNGWYVVKTVDNSESIKLQHCSLAKISDNSSTKVT 374

Query: 398 SSKMVPNWV 406
            ++M P+W+
Sbjct: 375 VAEMPPSWL 383


>AT2G40640.2 | Symbols:  | RING/U-box superfamily protein |
           chr2:16961488-16963198 REVERSE LENGTH=352
          Length = 352

 Score =  189 bits (481), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 91/150 (60%), Positives = 112/150 (74%), Gaps = 2/150 (1%)

Query: 221 STESGESLRAILSDPVTGALMEDAMILPCGHSFGGGGIQHVTRMKACCTCSQPVSEESIS 280
           S  S ESL+AILSDPVTGALM DA ILPCGHSFG GG++ V +MKAC TCSQP  E S  
Sbjct: 195 SVSSWESLKAILSDPVTGALMNDATILPCGHSFGAGGLKEVKKMKACFTCSQPTLEGSEK 254

Query: 281 PNLSLQAAVQAYRREEESQFYRSSKRRRERLDQG-GFGDSPVMESSR-SRGVQFPFAVMD 338
           PNLSL+  V A+R+EE+S    + KRR+ER DQ   F    + E+ + SRG+QFPF++ D
Sbjct: 255 PNLSLRIVVHAFRQEEDSDHIHTLKRRKERSDQKRSFCIPNITETPKSSRGIQFPFSIGD 314

Query: 339 RVVIKGNKRTPPRFVGREAIVTTQCLNGWY 368
            ++I+GNKRTPPRFVGR A++ TQCLNGW 
Sbjct: 315 HIIIEGNKRTPPRFVGRIAVIMTQCLNGWL 344


>AT3G19895.1 | Symbols:  | RING/U-box superfamily protein |
           chr3:6917530-6921211 REVERSE LENGTH=554
          Length = 554

 Score =  169 bits (427), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 78/171 (45%), Positives = 123/171 (71%), Gaps = 6/171 (3%)

Query: 227 SLRAILSDPVTGALMEDAMILPCGHSFGGGGIQHVTRMKACCTCSQPVSEESISPNLSLQ 286
           SLR++LSDP++GA +EDAM++ CGHSFGG  ++ V  M  C  C+  +   S+ PN +L+
Sbjct: 369 SLRSVLSDPISGAFLEDAMVVSCGHSFGGLMLRRVLEMSRCTLCNTEIESGSLVPNHALR 428

Query: 287 AAVQAYRREEESQFYRSS---KRRRERLDQGGF--GDSPVMESSRSRGVQFPFAVMDRVV 341
           AA  A +++++ + + ++   +RR+E  DQ     GD P  +    R V +PFAV ++V+
Sbjct: 429 AAASAIKQQDDKRLFHNAAMRRRRKEMSDQMDVENGD-PATDDGMHRVVHYPFAVNEKVL 487

Query: 342 IKGNKRTPPRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVLDD 392
           IKGN+RTP +FVG+EAIVT+QCLNGWY++K +++ ++V+LQYRSL K+++D
Sbjct: 488 IKGNRRTPEKFVGKEAIVTSQCLNGWYLLKIVESGDNVRLQYRSLKKMVND 538


>AT2G40640.3 | Symbols:  | RING/U-box superfamily protein |
           chr2:16961685-16963198 REVERSE LENGTH=314
          Length = 314

 Score =  122 bits (305), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 58/90 (64%), Positives = 68/90 (75%)

Query: 221 STESGESLRAILSDPVTGALMEDAMILPCGHSFGGGGIQHVTRMKACCTCSQPVSEESIS 280
           S  S ESL+AILSDPVTGALM DA ILPCGHSFG GG++ V +MKAC TCSQP  E S  
Sbjct: 195 SVSSWESLKAILSDPVTGALMNDATILPCGHSFGAGGLKEVKKMKACFTCSQPTLEGSEK 254

Query: 281 PNLSLQAAVQAYRREEESQFYRSSKRRRER 310
           PNLSL+  V A+R+EE+S    + KRR+ER
Sbjct: 255 PNLSLRIVVHAFRQEEDSDHIHTLKRRKER 284