Miyakogusa Predicted Gene
- Lj1g3v1134040.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1134040.1 Non Chatacterized Hit- tr|D8QRJ9|D8QRJ9_SELML
Putative uncharacterized protein OS=Selaginella
moelle,41.56,0.0000000001,no description,Transcription factor IIS,
N-terminal; no description,Transcription elongation factor
,CUFF.27141.1
(369 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G38560.1 | Symbols: TFIIS | transcript elongation factor IIS ... 314 6e-86
AT4G18720.1 | Symbols: | Transcription factor IIS protein | chr... 118 8e-27
AT2G42730.1 | Symbols: | F-box family protein | chr2:17787454-1... 113 2e-25
AT5G42325.1 | Symbols: | Transcription factor IIS protein | chr... 79 6e-15
AT5G25520.1 | Symbols: | SPOC domain / Transcription elongation... 67 2e-11
AT5G25520.2 | Symbols: | SPOC domain / Transcription elongation... 67 2e-11
AT2G25640.1 | Symbols: | SPOC domain / Transcription elongation... 63 3e-10
AT5G11430.1 | Symbols: | SPOC domain / Transcription elongation... 55 5e-08
>AT2G38560.1 | Symbols: TFIIS | transcript elongation factor IIS |
chr2:16134802-16136319 FORWARD LENGTH=378
Length = 378
Score = 314 bits (804), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 179/388 (46%), Positives = 222/388 (57%), Gaps = 29/388 (7%)
Query: 1 MEKELVELYEXXXXXXXXXXXXXXEH---EETRCIDALEQLKKFPVNYKILVNTQVGKHL 57
ME +L++L+E E ++CIDAL+QLKKFPV Y LV TQVGK L
Sbjct: 1 MESDLIDLFEGAKKAADAAALDGVTSSGPEVSQCIDALKQLKKFPVTYDTLVATQVGKKL 60
Query: 58 KVLTKHPKPKIKAFAVELIEIWKGIIIKETSKNKNGGSDNKVESANGDRAKAGKMQKSPS 117
+ L KHP IK+ A +L+EIWK ++I+ET+K K K E NG K K+ K
Sbjct: 61 RSLAKHPVEDIKSVATDLLEIWKKVVIEETAKAK------KTEGTNG--CKEAKVNKMDV 112
Query: 118 XXXXXXXXXXXXXIDRNGTPRSSSENTNKARN---VDVKIEK-------------TERAA 161
+ R + +S + N VKIE+ R
Sbjct: 113 EKPSNPAPVKVQKLQRGDSAKSIKVERKEPDNKVVTGVKIERKVPDIKVTNGTKIDYRGQ 172
Query: 162 SVKVEKIXXXXXXXXXXXXXXXXXXXPPKLTSMIKSNDSARDKIRELLREALSKVSEEAD 221
+VK EK+ KLT+M+K ND RDKIRELL EAL +V+ EAD
Sbjct: 173 AVKDEKVSKDNQSSMKAPAKAANAPP--KLTAMLKCNDPVRDKIRELLVEALCRVAGEAD 230
Query: 222 GDMMDEVNACDPIRVAVKVESVLFENWGASNGAQKVKYRSLMFNLKDAKNPDFRRKVLLG 281
+ VNA DP+RVAV VES++FE G S GAQK+KYRS+MFNL+D+ NPD RR+VL G
Sbjct: 231 DYERESVNASDPLRVAVSVESLMFEKLGRSTGAQKLKYRSIMFNLRDSNNPDLRRRVLTG 290
Query: 282 VIEPERLVNMSTAEMASXXXXXXXXXXXXXALFECERGAPPKATTDQFKCGRCGQRKCTY 341
I PE+L+ +S +MAS ALF+CERG KA+TDQFKCGRCGQRKCTY
Sbjct: 291 EISPEKLITLSAEDMASDKRKQENNQIKEKALFDCERGLAAKASTDQFKCGRCGQRKCTY 350
Query: 342 YQMQTRSADEPMTTYVTCTVCNNRWKFC 369
YQMQTRSADEPMTTYVTC C+N WKFC
Sbjct: 351 YQMQTRSADEPMTTYVTCVNCDNHWKFC 378
>AT4G18720.1 | Symbols: | Transcription factor IIS protein |
chr4:10299945-10301228 FORWARD LENGTH=266
Length = 266
Score = 118 bits (295), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 61/111 (54%), Positives = 75/111 (67%), Gaps = 1/111 (0%)
Query: 189 PKLTSMIKSNDSARDKIRELLREALSKV-SEEADGDMMDEVNACDPIRVAVKVESVLFEN 247
P +M K+ DS RDK+RE+L+ +L+KV SE D +M V ACDP VAV VE+ +FEN
Sbjct: 105 PTHATMKKTGDSKRDKVREILQTSLAKVASEVVDTEMKTRVTACDPWVVAVSVETAMFEN 164
Query: 248 WGASNGAQKVKYRSLMFNLKDAKNPDFRRKVLLGVIEPERLVNMSTAEMAS 298
G G QK KYRS++FN+ D+ NPD RRKVLLG I ERLV M EM S
Sbjct: 165 LGCFMGPQKAKYRSILFNMGDSNNPDLRRKVLLGEISGERLVKMEKEEMGS 215
>AT2G42730.1 | Symbols: | F-box family protein |
chr2:17787454-17791218 REVERSE LENGTH=737
Length = 737
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/111 (53%), Positives = 73/111 (65%), Gaps = 1/111 (0%)
Query: 189 PKLTSMIKSNDSARDKIRELLREALSKV-SEEADGDMMDEVNACDPIRVAVKVESVLFEN 247
P ++M K+ DS RDK+RE+L+ +L KV SE D +M V ACDP VAV VES +FE
Sbjct: 594 PTHSTMKKTGDSKRDKVREILQTSLVKVASEIVDTEMKTRVTACDPSVVAVSVESAMFEK 653
Query: 248 WGASNGAQKVKYRSLMFNLKDAKNPDFRRKVLLGVIEPERLVNMSTAEMAS 298
G G K KYRS++FN+ D+ NPD RRKVL+G I ERLV M EM S
Sbjct: 654 LGCFMGPHKAKYRSILFNMGDSNNPDLRRKVLIGEINGERLVTMERQEMGS 704
>AT5G42325.1 | Symbols: | Transcription factor IIS protein |
chr5:16924102-16924851 REVERSE LENGTH=233
Length = 233
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 64/112 (57%), Gaps = 18/112 (16%)
Query: 189 PKLTSMIKSNDSARDKIRELLREALSKVSEEA-DGDMMDEV-NACDPIRVAVKVESVLFE 246
P ++M K+ DS RDK+ E+L+ +L+KV+ E D +M V CDP VAV VES +
Sbjct: 104 PTHSTMKKTGDSKRDKVHEILQSSLAKVATEVVDTEMKRRVMTVCDPWVVAVSVESAM-- 161
Query: 247 NWGASNGAQKVKYRSLMFNLKDAKNPDFRRKVLLGVIEPERLVNMSTAEMAS 298
S++FN+ D+ NPD RRKVL+G I ERLV M EM S
Sbjct: 162 --------------SILFNMGDSNNPDLRRKVLIGEISGERLVKMEKDEMGS 199
>AT5G25520.1 | Symbols: | SPOC domain / Transcription elongation
factor S-II protein | chr5:8885550-8888157 FORWARD
LENGTH=735
Length = 735
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 43/67 (64%)
Query: 232 DPIRVAVKVESVLFENWGASNGAQKVKYRSLMFNLKDAKNPDFRRKVLLGVIEPERLVNM 291
DP +A K+E LF+ +G N K K RSL+FNLKD NP+ R V+ G I PERL NM
Sbjct: 359 DPELLASKIELELFKLFGGVNKKYKEKGRSLLFNLKDKNNPELRESVMSGKISPERLCNM 418
Query: 292 STAEMAS 298
+ E+AS
Sbjct: 419 TAEELAS 425
>AT5G25520.2 | Symbols: | SPOC domain / Transcription elongation
factor S-II protein | chr5:8885550-8889484 FORWARD
LENGTH=997
Length = 997
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 43/67 (64%)
Query: 232 DPIRVAVKVESVLFENWGASNGAQKVKYRSLMFNLKDAKNPDFRRKVLLGVIEPERLVNM 291
DP +A K+E LF+ +G N K K RSL+FNLKD NP+ R V+ G I PERL NM
Sbjct: 359 DPELLASKIELELFKLFGGVNKKYKEKGRSLLFNLKDKNNPELRESVMSGKISPERLCNM 418
Query: 292 STAEMAS 298
+ E+AS
Sbjct: 419 TAEELAS 425
>AT2G25640.1 | Symbols: | SPOC domain / Transcription elongation
factor S-II protein | chr2:10910836-10913908 FORWARD
LENGTH=745
Length = 745
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 232 DPIRVAVKVESVLFENWGASNGAQKVKYRSLMFNLKDAKNPDFRRKVLLGVIEPERLVNM 291
DP +A ++E+ LF+ +G N K K RSL+FNLKD NP R KV+ G I ERL +M
Sbjct: 315 DPQVLAFEIETELFKLFGGVNKKYKEKGRSLLFNLKDKSNPKLREKVMYGEIAAERLCSM 374
Query: 292 STAEMAS 298
S E+AS
Sbjct: 375 SAEELAS 381
>AT5G11430.1 | Symbols: | SPOC domain / Transcription elongation
factor S-II protein | chr5:3648469-3652256 FORWARD
LENGTH=873
Length = 873
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%)
Query: 213 LSKVSEEADGDMMDEVNACDPIRVAVKVESVLFENWGASNGAQKVKYRSLMFNLKDAKNP 272
+S + E D E + DP +A K+E L++ +G N + + RSL+FNLKD NP
Sbjct: 241 VSDLGETKDYGTGGEKSFQDPKLLASKIEMELYKLFGGVNKKYRERGRSLLFNLKDKNNP 300
Query: 273 DFRRKVLLGVIEPERLVNMSTAEMAS 298
+ R +V+ I ERL +M+ E+AS
Sbjct: 301 ELRERVMSEEISAERLCSMTAEELAS 326