Miyakogusa Predicted Gene

Lj1g3v1134010.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1134010.1 Non Chatacterized Hit- tr|G8A1B0|G8A1B0_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,35.12,2e-18,coiled-coil,NULL; seg,NULL,CUFF.27137.1
         (616 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G56410.2 | Symbols:  | Protein of unknown function (DUF3133) ...    55   1e-07
AT3G56410.1 | Symbols:  | Protein of unknown function (DUF3133) ...    55   1e-07
AT5G05190.1 | Symbols:  | Protein of unknown function (DUF3133) ...    53   5e-07
AT2G46380.1 | Symbols:  | Protein of unknown function (DUF3133) ...    52   1e-06
AT3G61670.1 | Symbols:  | Protein of unknown function (DUF3133) ...    52   1e-06

>AT3G56410.2 | Symbols:  | Protein of unknown function (DUF3133) |
          chr3:20916320-20921134 REVERSE LENGTH=1535
          Length = 1535

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 30/46 (65%), Gaps = 4/46 (8%)

Query: 1  MSDKVVPKL----RVVRCPKCNQLLPEPPGYELYKCGGCGTLLKAK 42
          M  + VP L    R+VRCPKC++LL EP     YKCGGC ++L AK
Sbjct: 52 MRSRTVPGLSSQSRIVRCPKCHKLLQEPLDATSYKCGGCDSILHAK 97


>AT3G56410.1 | Symbols:  | Protein of unknown function (DUF3133) |
          chr3:20916320-20920877 REVERSE LENGTH=1488
          Length = 1488

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 30/46 (65%), Gaps = 4/46 (8%)

Query: 1  MSDKVVPKL----RVVRCPKCNQLLPEPPGYELYKCGGCGTLLKAK 42
          M  + VP L    R+VRCPKC++LL EP     YKCGGC ++L AK
Sbjct: 5  MRSRTVPGLSSQSRIVRCPKCHKLLQEPLDATSYKCGGCDSILHAK 50


>AT5G05190.1 | Symbols:  | Protein of unknown function (DUF3133) |
          chr5:1541853-1543875 FORWARD LENGTH=615
          Length = 615

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 1  MSDKVVPKLRVVRCPKCNQLLPEPPGYELYKCGGCGTLLKAK--GLSVTSASSIQETDAA 58
          M+ +   K+R+VRCPKC ++L E     +Y+CGGC  +L+AK   ++ +S  S  ET+ A
Sbjct: 1  MASQTGQKIRLVRCPKCLKILQEDEDVPVYQCGGCSAILQAKRRNIAPSSTPSAGETERA 60

Query: 59 PRNALDLVSE 68
            N    V E
Sbjct: 61 QANEPQSVPE 70


>AT2G46380.1 | Symbols:  | Protein of unknown function (DUF3133) |
          chr2:19039377-19042171 FORWARD LENGTH=768
          Length = 768

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 28/42 (66%)

Query: 1  MSDKVVPKLRVVRCPKCNQLLPEPPGYELYKCGGCGTLLKAK 42
          M++    + R+VRCPKC  LL EP     ++CGGCGT+L AK
Sbjct: 1  MAESSTIEARLVRCPKCKNLLQEPKDCPFFQCGGCGTVLCAK 42


>AT3G61670.1 | Symbols:  | Protein of unknown function (DUF3133) |
          chr3:22819052-22821870 FORWARD LENGTH=790
          Length = 790

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 20/35 (57%), Positives = 26/35 (74%)

Query: 8  KLRVVRCPKCNQLLPEPPGYELYKCGGCGTLLKAK 42
          K+R+VRCPKC  LL EP     ++CGGC T+L+AK
Sbjct: 6  KVRLVRCPKCENLLSEPEDSPFFQCGGCFTVLRAK 40