Miyakogusa Predicted Gene

Lj1g3v1123960.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1123960.1 Non Chatacterized Hit- tr|A5B7T3|A5B7T3_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,55.56,2e-16,seg,NULL,gene.g30865.t1.1
         (181 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G05220.1 | Symbols:  | unknown protein; Has 30201 Blast hits ...    70   1e-12

>AT5G05220.1 | Symbols:  | unknown protein; Has 30201 Blast hits to
           17322 proteins in 780 species: Archae - 12; Bacteria -
           1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr5:1550273-1550821 FORWARD LENGTH=182
          Length = 182

 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 38/46 (82%)

Query: 123 KGAVELLECLEREAIMGADIGKEPTDYNRRAQIFDRSSAVFQALRE 168
           +G  ELLECLE+EAIMG D G++P DYNRRA+IFD+SS +F+ L E
Sbjct: 84  RGVWELLECLEKEAIMGNDDGRDPRDYNRRAKIFDKSSKIFKNLNE 129



 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 35/40 (87%)

Query: 129 LECLEREAIMGADIGKEPTDYNRRAQIFDRSSAVFQALRE 168
           ++ LE+EAIMGAD GK+P DYNRRA+IFD+SS +F+ ++E
Sbjct: 136 VDYLEKEAIMGADDGKDPKDYNRRAKIFDKSSKIFKNIKE 175