Miyakogusa Predicted Gene
- Lj1g3v1123920.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1123920.1 Non Chatacterized Hit- tr|D7LYB7|D7LYB7_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,32.43,0.00000000000004,coiled-coil,NULL; DUF3133,Protein of
unknown function DUF3133,CUFF.27135.1
(732 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G05190.1 | Symbols: | Protein of unknown function (DUF3133) ... 87 6e-17
AT3G56410.1 | Symbols: | Protein of unknown function (DUF3133) ... 67 6e-11
AT3G56410.2 | Symbols: | Protein of unknown function (DUF3133) ... 66 7e-11
AT3G61670.1 | Symbols: | Protein of unknown function (DUF3133) ... 66 9e-11
AT1G01440.1 | Symbols: | Protein of unknown function (DUF3133) ... 66 1e-10
AT4G01090.1 | Symbols: | Protein of unknown function (DUF3133) ... 57 6e-08
AT2G46380.1 | Symbols: | Protein of unknown function (DUF3133) ... 53 7e-07
>AT5G05190.1 | Symbols: | Protein of unknown function (DUF3133) |
chr5:1541853-1543875 FORWARD LENGTH=615
Length = 615
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 50/68 (73%), Gaps = 2/68 (2%)
Query: 518 REKKNLAKRHHKPVAGGAPFVTCHNRKCLNLLHLPVDFLLSKKACHQLRCGKCSEILEFS 577
RE++ +AKRH +P AGGAPFV+C++ C L LPVDFL+ K+ H LRCG C+ +L FS
Sbjct: 480 RERQRVAKRHVRPTAGGAPFVSCYS--CSENLQLPVDFLIFKRKHHLLRCGTCTTVLRFS 537
Query: 578 LQNGRHMV 585
LQ+ H+V
Sbjct: 538 LQSRNHLV 545
>AT3G56410.1 | Symbols: | Protein of unknown function (DUF3133) |
chr3:20916320-20920877 REVERSE LENGTH=1488
Length = 1488
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 514 RKHSREKKNLAKRHHKPVAGGAPFVTCHNRKCLNLLHLPVDFLLSKKACHQLRCGKCSEI 573
+++ RE+ + KRH P AGGAPF TC CL LL LP K+ +Q+RCG CS +
Sbjct: 312 KRYVRERNPVVKRHILPSAGGAPFATC--SYCLELLQLPQVSPQGKRQRYQVRCGSCSGV 369
Query: 574 LEFSLQNGRHMV 585
L+FS++ V
Sbjct: 370 LKFSIREKADTV 381
>AT3G56410.2 | Symbols: | Protein of unknown function (DUF3133) |
chr3:20916320-20921134 REVERSE LENGTH=1535
Length = 1535
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 514 RKHSREKKNLAKRHHKPVAGGAPFVTCHNRKCLNLLHLPVDFLLSKKACHQLRCGKCSEI 573
+++ RE+ + KRH P AGGAPF TC CL LL LP K+ +Q+RCG CS +
Sbjct: 359 KRYVRERNPVVKRHILPSAGGAPFATC--SYCLELLQLPQVSPQGKRQRYQVRCGSCSGV 416
Query: 574 LEFSLQNGRHMV 585
L+FS++ V
Sbjct: 417 LKFSIREKADTV 428
>AT3G61670.1 | Symbols: | Protein of unknown function (DUF3133) |
chr3:22819052-22821870 FORWARD LENGTH=790
Length = 790
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 123/302 (40%), Gaps = 85/302 (28%)
Query: 351 SNEDTEQEKVKLLRMINQMQEQLQRSRSFSEESNG------------------RFPSTGF 392
SNE EQ++ LLR + +++EQL +S + + + + RF STG
Sbjct: 187 SNEAIEQDRAGLLRQLEKIKEQLVQSCNVATDKSKEQAPSSSSASGLNKAPPMRFHSTGN 246
Query: 393 HHI---SAYHD------------------------HDPHK----GRFPHTLNHLRY--NE 419
H + S YH DPH+ GR PH +Y N
Sbjct: 247 HAVGGPSYYHQPQFPYNNNNINEAPMHHSLMHPSYGDPHRFPIHGRGPHPYFSGQYVGNN 306
Query: 420 RSSHEVV-------SHQRHNFSQM--PYSAEATRIS-PHVDHSYYH--FHPHFSTD--LP 465
+ H++ H H+ Y + R S P V + Y+ F+PH S P
Sbjct: 307 NNGHDLFDAYPQQNGHFHHSSCSCYHCYDNKYWRGSAPVVPDAPYNAGFYPHESVMGFAP 366
Query: 466 PHVPFHHEGLHRSYPGQDYSSYHRFYPSTPQSYA-ASKSGDQRNRVPAVRKHSREKKNLA 524
PH P R+Y + + R+ P +++ A R R P V
Sbjct: 367 PHNP-------RTYGSRGLQPHGRW----PSNFSDAQMDALSRIRPPKVVLSG------G 409
Query: 525 KRHHKPVAGGAPFVTCHNRKCLNLLHLPVDFLLSKKACHQLRCGKCSEILEFSLQNGRHM 584
RH +P+AGGAPF+TC N C LL LP K ++RCG CS +++ S+ N + +
Sbjct: 410 SRHIRPLAGGAPFITCQN--CFELLQLPKKPEAGTKKQQKVRCGACSCLIDLSVVNNKFV 467
Query: 585 VS 586
+S
Sbjct: 468 LS 469
>AT1G01440.1 | Symbols: | Protein of unknown function (DUF3133) |
chr1:159935-162219 REVERSE LENGTH=664
Length = 664
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 131/315 (41%), Gaps = 76/315 (24%)
Query: 355 TEQEKVKLLRMINQMQEQLQRSRSFSEESNGRFPSTGFH--HISAYHDHDPHKGRFPHTL 412
T++++ +LLR ++ +++ L R + + P GFH H ++P+ FP+ +
Sbjct: 81 TDKQQAELLRKLDSIKDHLLRGGGNNATVVDQ-PPMGFHAHHGPPPSYYNPYPEPFPYGM 139
Query: 413 NHLRYNERSSHEVVSHQRHNFS-QMPYSAEATRISPHVDHSYYHFHPHFSTDLPPHVPFH 471
+ S+Q H + + PY RI ++Y H+ +PP P+
Sbjct: 140 ----------YPTASNQPHVPAYRDPYGFPVHRIP----QNFYQGPSHYPNQMPPRPPYP 185
Query: 472 HEGLHRSYPGQDYSSYH----RFYPSTPQSYAA----------------SKSGDQRNRVP 511
+G + G D RF+P TP Y S G R P
Sbjct: 186 -QGQYVDI-GSDILESQLQDPRFFPGTPSRYGDVPFSPALHHGEKVGPFSPHGGVHTRWP 243
Query: 512 A----------VRKHSREK-KNLAKRHHKPVAGGAPFVTCHNRKCLNLLHLPVDFLLSKK 560
+ R + ++ + R P+AGGAPF+ CH+ C LL++P LL ++
Sbjct: 244 SEIDSEMGGAFARGYVQQAVSDTDSRRCHPLAGGAPFIACHS--CFELLYVPKKKLLGQE 301
Query: 561 ACHQLRCGKCSEILEFSLQNGRHMVSFSSNAKGPP----SSELNDQSKVISGSYHANYYK 616
+++CG CSE++ F + + + + FSS+A G S E+ D+S
Sbjct: 302 RQQKMQCGACSEVITFRVVDKK--LVFSSSALGETTNRVSVEVEDRSS------------ 347
Query: 617 YSPAEPISFVDDYGL 631
PI VDDY L
Sbjct: 348 -----PIPVVDDYPL 357
>AT4G01090.1 | Symbols: | Protein of unknown function (DUF3133) |
chr4:470834-473248 REVERSE LENGTH=714
Length = 714
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 86/185 (46%), Gaps = 34/185 (18%)
Query: 451 HSYYHFHPHFSTDLPPHVPF--HH--EGLHRSY----PGQDYSSYHRF------------ 490
HSYY P DLPP+ P HH E L Y P SS+HR
Sbjct: 201 HSYYPATPGRYGDLPPYSPVSSHHREEKLATQYSDMPPYSPVSSHHRGEKLTTPYSPRVN 260
Query: 491 ----YPST-----PQSYAASKSGDQRNRVPAVRKHSREKKNLAK---RHHKPVAGGAPFV 538
+PS+ P+ A + + + KK ++ R P+AGGAPF+
Sbjct: 261 NGSSFPSSMGTPGPRGGYARWPSEHDSEMGGAFARGYVKKAVSDTGVRRCHPLAGGAPFI 320
Query: 539 TCHNRKCLNLLHLPVDFLLSKKACHQLRCGKCSEILEFSLQNGRHMVSFSSNAKGPPSSE 598
CH+ C LL+LP LLS++ H+L+CG CSE++ F++ + + + S + P S E
Sbjct: 321 ACHS--CFELLYLPKKKLLSQERLHKLQCGACSEVISFTIVDRKLVFSSGNEETKPVSLE 378
Query: 599 LNDQS 603
+ D++
Sbjct: 379 VEDRN 383
>AT2G46380.1 | Symbols: | Protein of unknown function (DUF3133) |
chr2:19039377-19042171 FORWARD LENGTH=768
Length = 768
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 526 RHHKPVAGGAPFVTCHNRKCLNLLHLPVDFLLSKKACHQLRCGKCSEILEFSLQNGRHMV 585
R +PVAGGAPF+ C N C LL LP + + ++RCG CS ++++S + + ++
Sbjct: 376 RLIQPVAGGAPFINCIN--CFKLLKLPEKIDSATRKKQRMRCGACSCVIDYSFVDKKLIL 433
Query: 586 S 586
S
Sbjct: 434 S 434