Miyakogusa Predicted Gene

Lj1g3v1102750.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1102750.1 Non Chatacterized Hit- tr|J3LHQ2|J3LHQ2_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB02G4,71.88,1e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.26848.1
         (315 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G54190.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...   531   e-151
AT2G38630.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...   499   e-142

>AT3G54190.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr3:20061759-20063880 REVERSE LENGTH=467
          Length = 467

 Score =  531 bits (1367), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 261/303 (86%), Positives = 282/303 (93%), Gaps = 5/303 (1%)

Query: 6   GRRITVSPRPCCGRRVVAKKGPRRGGAVDGFVNSVKKLQRREISSKRDRAFTMTDAQERF 65
           GRRIT SPRPC GRR+VAKK  R     DGFVNSVKKLQRREISS++DRAF+++ AQERF
Sbjct: 3   GRRITASPRPCSGRRIVAKKRSR----PDGFVNSVKKLQRREISSRKDRAFSISTAQERF 58

Query: 66  RNIRLQEEYDTHDPKGPSSAVVLPFLRRRSKIIEIVAAQDIVFALAQSGVCAAFSRESNQ 125
           RN+RL E+YDTHDPKG    V LPFL +R+K+IEIVAA+DIVFALA SGVCAAFSRESN+
Sbjct: 59  RNMRLVEQYDTHDPKG-HCLVALPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRESNK 117

Query: 126 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDSYSSLKCRSTRIEYIRRGKPDAGFAL 185
           RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASD++SSLKCRSTRIEYI RG+PDAGFAL
Sbjct: 118 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTRIEYILRGQPDAGFAL 177

Query: 186 FESESLKWPGFVEFDDVNGKVLTFSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIM 245
           FESESLKWPGFVEFDDVNGKVLT+SAQDS+YKVFDLKNYTMLYSISDKNVQEIKISPGIM
Sbjct: 178 FESESLKWPGFVEFDDVNGKVLTYSAQDSVYKVFDLKNYTMLYSISDKNVQEIKISPGIM 237

Query: 246 LLIFAKASSHVPLKILSIEDGTVLKSFNHLLYRNKKVDFIEQFNEKLLVKQENENLQILD 305
           LLIF +A+SHVPLKILSIEDGTVLKSFNHLL+RNKKVDFIEQFNEKLLVKQENENLQILD
Sbjct: 238 LLIFKRAASHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILD 297

Query: 306 VSN 308
           V N
Sbjct: 298 VRN 300


>AT2G38630.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr2:16154283-16156302 REVERSE LENGTH=467
          Length = 467

 Score =  499 bits (1286), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 249/304 (81%), Positives = 275/304 (90%), Gaps = 6/304 (1%)

Query: 6   GRRITVSPRPCCG-RRVVAKKGPRRGGAVDGFVNSVKKLQRREISSKRDRAFTMTDAQER 64
           GRRI  +PRPC G RRV+AKK  R     DGFVNSVKKLQRREISS+ DRAF+++ AQER
Sbjct: 4   GRRIIANPRPCSGSRRVIAKKRSR----PDGFVNSVKKLQRREISSRMDRAFSISTAQER 59

Query: 65  FRNIRLQEEYDTHDPKGPSSAVVLPFLRRRSKIIEIVAAQDIVFALAQSGVCAAFSRESN 124
           FRN+RL E+YDTHDPKG    V LP L +RSK+IEIVAA+DIVFAL  SGVCA+FSRE+N
Sbjct: 60  FRNMRLVEQYDTHDPKG-YCLVSLPNLLKRSKVIEIVAARDIVFALTLSGVCASFSRETN 118

Query: 125 QRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDSYSSLKCRSTRIEYIRRGKPDAGFA 184
           +++CFLNVSPDEVIRSLFYNKNNDSLITVSVYASD+YSSLKCRSTRIEYI RG+ DAGF 
Sbjct: 119 KKVCFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNYSSLKCRSTRIEYILRGQADAGFP 178

Query: 185 LFESESLKWPGFVEFDDVNGKVLTFSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGI 244
           LFESESLKWPGFVEFDDVNGKVLT+SAQDS+YKVFDLKNY +LYSISDKNVQEIKISPGI
Sbjct: 179 LFESESLKWPGFVEFDDVNGKVLTYSAQDSVYKVFDLKNYALLYSISDKNVQEIKISPGI 238

Query: 245 MLLIFAKASSHVPLKILSIEDGTVLKSFNHLLYRNKKVDFIEQFNEKLLVKQENENLQIL 304
           MLLIF +A+SHVPLKILSIEDGT+LKSF+HLL+RNKKVDFIEQFNEKLLVKQENENLQIL
Sbjct: 239 MLLIFKRAASHVPLKILSIEDGTLLKSFHHLLHRNKKVDFIEQFNEKLLVKQENENLQIL 298

Query: 305 DVSN 308
           DV N
Sbjct: 299 DVRN 302