Miyakogusa Predicted Gene

Lj1g3v1090980.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1090980.1 Non Chatacterized Hit- tr|K4D258|K4D258_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,55.28,3e-19,SUBFAMILY NOT NAMED,NULL; NASCENT POLYPEPTIDE
ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED,NULL; seg,NUL,CUFF.26791.1
         (136 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G49470.1 | Symbols: NACA2 | nascent polypeptide-associated co...    99   1e-21
AT4G10480.2 | Symbols:  | Nascent polypeptide-associated complex...    93   5e-20
AT4G10480.1 | Symbols:  | Nascent polypeptide-associated complex...    93   5e-20
AT3G12390.1 | Symbols:  | Nascent polypeptide-associated complex...    89   9e-19
AT5G13850.1 | Symbols: NACA3 | nascent polypeptide-associated co...    89   1e-18
AT1G33040.1 | Symbols: NACA5 | nascent polypeptide-associated co...    87   4e-18

>AT3G49470.1 | Symbols: NACA2 | nascent polypeptide-associated
           complex subunit alpha-like protein 2 |
           chr3:18341072-18342273 FORWARD LENGTH=217
          Length = 217

 Score = 98.6 bits (244), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 44/47 (93%), Positives = 47/47 (100%)

Query: 90  AMLKLGLKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGE 136
           AMLKLG+KPVTGVSRVTIKRTKN+LFFISKPDVFKSP+SETYVIFGE
Sbjct: 79  AMLKLGMKPVTGVSRVTIKRTKNVLFFISKPDVFKSPHSETYVIFGE 125


>AT4G10480.2 | Symbols:  | Nascent polypeptide-associated complex
           (NAC), alpha subunit family protein |
           chr4:6478089-6479079 REVERSE LENGTH=211
          Length = 211

 Score = 93.2 bits (230), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 42/47 (89%), Positives = 45/47 (95%)

Query: 90  AMLKLGLKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGE 136
           AMLKLG+KPVT VSRVTIKR+KN+LF ISKPDVFKSPNSETYVIFGE
Sbjct: 73  AMLKLGMKPVTDVSRVTIKRSKNVLFVISKPDVFKSPNSETYVIFGE 119


>AT4G10480.1 | Symbols:  | Nascent polypeptide-associated complex
           (NAC), alpha subunit family protein |
           chr4:6478089-6479079 REVERSE LENGTH=212
          Length = 212

 Score = 92.8 bits (229), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 42/47 (89%), Positives = 45/47 (95%)

Query: 90  AMLKLGLKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGE 136
           AMLKLG+KPVT VSRVTIKR+KN+LF ISKPDVFKSPNSETYVIFGE
Sbjct: 74  AMLKLGMKPVTDVSRVTIKRSKNVLFVISKPDVFKSPNSETYVIFGE 120


>AT3G12390.1 | Symbols:  | Nascent polypeptide-associated complex
           (NAC), alpha subunit family protein |
           chr3:3942344-3943595 FORWARD LENGTH=203
          Length = 203

 Score = 89.0 bits (219), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 39/47 (82%), Positives = 45/47 (95%)

Query: 90  AMLKLGLKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGE 136
           AMLKLG+KP+TGVSRVT+K++KNILF ISKPDVFKSP S+TYVIFGE
Sbjct: 69  AMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGE 115


>AT5G13850.1 | Symbols: NACA3 | nascent polypeptide-associated
           complex subunit alpha-like protein 3 |
           chr5:4471361-4472676 FORWARD LENGTH=204
          Length = 204

 Score = 88.6 bits (218), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 39/47 (82%), Positives = 45/47 (95%)

Query: 90  AMLKLGLKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGE 136
           AMLKLG+KP+TGVSRVT+K++KNILF ISKPDVFKSP S+TYVIFGE
Sbjct: 65  AMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGE 111


>AT1G33040.1 | Symbols: NACA5 | nascent polypeptide-associated
           complex subunit alpha-like protein 5 |
           chr1:11966547-11967696 FORWARD LENGTH=209
          Length = 209

 Score = 86.7 bits (213), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 38/47 (80%), Positives = 44/47 (93%)

Query: 90  AMLKLGLKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGE 136
           A+LKLG+KPV+ VSRVTIKR KN+LF ISKPDV+KSPN+ETYVIFGE
Sbjct: 71  AVLKLGMKPVSDVSRVTIKRAKNVLFVISKPDVYKSPNAETYVIFGE 117