Miyakogusa Predicted Gene

Lj1g3v1079500.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1079500.1 Non Chatacterized Hit- tr|E1ZE57|E1ZE57_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,35.44,2e-17,seg,NULL,CUFF.26770.1
         (299 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24460.1 | Symbols:  | unknown protein; INVOLVED IN: biologic...   263   1e-70

>AT5G24460.1 | Symbols:  | unknown protein; INVOLVED IN:
           biological_process unknown; LOCATED IN: cell wall;
           EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15
           growth stages; Has 1807 Blast hits to 1807 proteins in
           277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
           Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
           - 339 (source: NCBI BLink). | chr5:8354815-8355717
           FORWARD LENGTH=300
          Length = 300

 Score =  263 bits (672), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 145/283 (51%), Positives = 179/283 (63%), Gaps = 23/283 (8%)

Query: 23  SLPDLYLTTLSVCFLFTSSRSHHSTSCPFPSLPLNRRRFLKIPAMSHSTTXXXXXXXXXX 82
           +LPD++L  +S+ FL++S +   S      S PLN RR   I AMS  +           
Sbjct: 31  ALPDIFLAAVSLLFLWSSPKPLVSLPPNRFSFPLNPRR-RSITAMSRRSPPPPPPT---- 85

Query: 83  XXXXXXXXRHSFASPQSLSDWLKPRLPTDSFATWGVKPGTKNVHNLWLEIAEGETSLEDS 142
                      FA+PQSLSDWL+ RLP+DSFA WGVKPGTKNVHNLWLE+++GETSL DS
Sbjct: 86  ---------QRFANPQSLSDWLESRLPSDSFAAWGVKPGTKNVHNLWLELSDGETSLADS 136

Query: 143 TPPIXXXXXXXXXXXGKDGKFLVESHQELSDGNVRKRGRPLSEKMKPNEDPESAAVRAIR 202
           TPP+           GK+G+ LVE+HQELSDG++R+R RPLSEKMKP E P+ A  RAI+
Sbjct: 137 TPPVRTVNVVTVRVIGKNGRILVEAHQELSDGSIRERFRPLSEKMKPEESPDEAVFRAIK 196

Query: 203 EELGSLIGGGAE--GDIVTIDPNSYEMREEERCSGSYPGLPGCYVLHTLNATVEGLPEGD 260
           EELGS+  G  +  G  + I P +Y  R EER S SYPGLP  Y LH++NATVEGLPE D
Sbjct: 197 EELGSIFNGDGDNIGQRIKILPGTYNRRVEERNSLSYPGLPARYALHSVNATVEGLPEQD 256

Query: 261 FCTYEHDEYSCLDDKK------VANQAVGVRKHHWTWVSADSL 297
           FCT E  EY   D  K       A  AV V++H+W WVS DS+
Sbjct: 257 FCT-EEKEYEGGDSTKDSVETLAAGNAVTVKRHYWKWVSPDSI 298