Miyakogusa Predicted Gene

Lj1g3v1074620.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1074620.3 tr|Q7V2R9|Q7V2R9_PROMP Light repressed protein A
homolog OS=Prochlorococcus marinus subsp. pastoris ,39.76,3e-19,no
description,Ribosomal protein S30Ae/sigma 54 modulation protein;
Ribosome binding protein Y (YfiA,CUFF.26709.3
         (202 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24490.1 | Symbols:  | 30S ribosomal protein, putative | chr5...   217   4e-57

>AT5G24490.1 | Symbols:  | 30S ribosomal protein, putative |
           chr5:8365690-8367178 FORWARD LENGTH=308
          Length = 308

 Score =  217 bits (553), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 116/165 (70%), Positives = 128/165 (77%), Gaps = 4/165 (2%)

Query: 41  IVREIDVRLSTRGGGEFGRGPRTSRCEVTLFTKRHGVVRAEEDSETTYASIDLVSSIIQR 100
           +VRE+DVRLS RGG EFG+GPR  RCEVTLFTK+HGVVRAEED+ET YA IDLVS+IIQR
Sbjct: 115 LVREVDVRLSVRGG-EFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYACIDLVSTIIQR 173

Query: 101 KLRKIKEKVSDHGRHMKGFNRAKVRXXXXXXXXXXXXXXI--SPLEEEGEATLV-EVVRT 157
           KLRKIKEK SDHGRHMKGFNR KVR                 S  EEE E  L+ E+VRT
Sbjct: 174 KLRKIKEKDSDHGRHMKGFNRLKVREPVIEPVVEDVEDSTDSSVGEEEEEDDLIKEIVRT 233

Query: 158 KYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGG 202
           K F+MPPLTV+EA+EQL  V H FY F+NEETGEINIVYKRKEGG
Sbjct: 234 KTFEMPPLTVAEAVEQLELVSHDFYGFQNEETGEINIVYKRKEGG 278