Miyakogusa Predicted Gene

Lj1g3v1074620.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1074620.2 tr|C1EFG3|C1EFG3_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17)
GN=MICPUN_109404,46.67,1e-18,no description,Ribosomal protein
S30Ae/sigma 54 modulation protein; Ribosome binding protein Y
(YfiA,CUFF.26709.2
         (182 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24490.1 | Symbols:  | 30S ribosomal protein, putative | chr5...   200   6e-52

>AT5G24490.1 | Symbols:  | 30S ribosomal protein, putative |
           chr5:8365690-8367178 FORWARD LENGTH=308
          Length = 308

 Score =  200 bits (508), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 95/118 (80%), Positives = 109/118 (92%), Gaps = 1/118 (0%)

Query: 64  AVRNSWDGPLSSVKLIIQGKNLDLTDAVKQHVEDKVGKAVQKHSHIVREIDVRLSTRGGG 123
           AV+ SWDGPL+SVKLIIQGKNL+L++ +KQHVE+KVGK+VQKHSH+VRE+DVRLS RGG 
Sbjct: 70  AVKMSWDGPLASVKLIIQGKNLELSEPIKQHVEEKVGKSVQKHSHLVREVDVRLSVRGG- 128

Query: 124 EFGRGPRTSRCEVTLFTKRHGVVRAEEDSETTYASIDLVSSIIQRKLRKIKEKVSDHG 181
           EFG+GPR  RCEVTLFTK+HGVVRAEED+ET YA IDLVS+IIQRKLRKIKEK SDHG
Sbjct: 129 EFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYACIDLVSTIIQRKLRKIKEKDSDHG 186