Miyakogusa Predicted Gene

Lj1g3v1073610.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1073610.2 tr|Q94JR0|Q94JR0_ARATH At1g32790 OS=Arabidopsis
thaliana PE=2 SV=1,42.86,0.000000000007,RRM,RNA recognition motif
domain; SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL; no
description,Nu,CUFF.26724.2
         (92 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G32790.1 | Symbols: CID11 | CTC-interacting domain 11 | chr1:...   166   4e-42
AT4G10610.1 | Symbols: RBP37, ATRBP37, CID12 | CTC-interacting d...   156   3e-39
AT1G53650.1 | Symbols: CID8 | CTC-interacting domain 8 | chr1:20...   147   2e-36
AT1G53650.2 | Symbols: CID8 | CTC-interacting domain 8 | chr1:20...   146   2e-36
AT3G14450.1 | Symbols: CID9 | CTC-interacting domain 9 | chr3:48...   146   2e-36
AT3G49390.2 | Symbols: CID10 | CTC-interacting domain 10 | chr3:...   138   6e-34
AT3G49390.1 | Symbols: CID10 | CTC-interacting domain 10 | chr3:...   138   6e-34
AT5G24440.1 | Symbols: CID13 | CTC-interacting domain 13 | chr5:...   135   6e-33
AT1G32790.2 | Symbols: CID11 | CTC-interacting domain 11 | chr1:...   134   2e-32
AT4G10610.2 | Symbols: RBP37, ATRBP37 | CTC-interacting domain 1...   130   2e-31

>AT1G32790.1 | Symbols: CID11 | CTC-interacting domain 11 |
           chr1:11875174-11877188 REVERSE LENGTH=358
          Length = 358

 Score =  166 bits (419), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 78/92 (84%), Positives = 84/92 (91%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITA 60
           MC+RTIYCTNIDKK+TQSDVK FFES CGEV RLRLLGD+ HSTRIAFVEF +AESAI A
Sbjct: 267 MCARTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLLGDYQHSTRIAFVEFVMAESAIAA 326

Query: 61  LSCSGVILGSLPIRVSPSKTPVRSRSPRSPMH 92
           L+CSGV+LGSLPIRVSPSKTPVR RSPR PMH
Sbjct: 327 LNCSGVVLGSLPIRVSPSKTPVRPRSPRHPMH 358



 Score = 72.8 bits (177), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 54/84 (64%), Gaps = 1/84 (1%)

Query: 4   RTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITALSC 63
           RT+Y +++D+++T+  +   F S CG+V   R+ GD N   R AF+EF   E A+TAL+ 
Sbjct: 173 RTVYVSDLDQQVTEEQLAGLFVS-CGQVVDCRICGDPNSVLRFAFIEFTDEEGAMTALNL 231

Query: 64  SGVILGSLPIRVSPSKTPVRSRSP 87
           SG +LG  P++V PSKT +   +P
Sbjct: 232 SGTMLGFYPVKVLPSKTAIAPVNP 255


>AT4G10610.1 | Symbols: RBP37, ATRBP37, CID12 | CTC-interacting
           domain 12 | chr4:6557336-6559143 FORWARD LENGTH=336
          Length = 336

 Score =  156 bits (394), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 74/93 (79%), Positives = 84/93 (90%), Gaps = 1/93 (1%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITA 60
           MC+RTIYCTNIDKKLTQ+D+K FFES+CGEV RLRLLGD++H TRI FVEF +AESAI A
Sbjct: 244 MCARTIYCTNIDKKLTQTDIKLFFESVCGEVYRLRLLGDYHHPTRIGFVEFVMAESAIAA 303

Query: 61  LSCSGVILGSLPIRVSPSKTPVRSRS-PRSPMH 92
           L+CSGV+LGSLPIRVSPSKTPVRSR+ PR  MH
Sbjct: 304 LNCSGVLLGSLPIRVSPSKTPVRSRAIPRHQMH 336



 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 1/84 (1%)

Query: 4   RTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITALSC 63
           RT+Y ++ID+++T+  +   F    G+V   R+ GD N   R AF+EF     A TAL+ 
Sbjct: 150 RTVYVSDIDQQVTEEQLAGLFIGF-GQVVDCRICGDPNSVLRFAFIEFTDEVGARTALNL 208

Query: 64  SGVILGSLPIRVSPSKTPVRSRSP 87
           SG +LG  P++V PSKT +   +P
Sbjct: 209 SGTMLGFYPVKVMPSKTAIAPVNP 232


>AT1G53650.1 | Symbols: CID8 | CTC-interacting domain 8 |
           chr1:20029262-20031243 REVERSE LENGTH=314
          Length = 314

 Score =  147 bits (370), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 68/90 (75%), Positives = 76/90 (84%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITA 60
           MCSRTIYCTN+DK  T+ DV  FF+S CGEV RLRLLGD  HSTRIAFVEF +AESA+ A
Sbjct: 222 MCSRTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQVHSTRIAFVEFAMAESAVAA 281

Query: 61  LSCSGVILGSLPIRVSPSKTPVRSRSPRSP 90
           L+CSG++LGS PIRVSPSKTPVRSR  RSP
Sbjct: 282 LNCSGIVLGSQPIRVSPSKTPVRSRITRSP 311



 Score = 69.7 bits (169), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 4   RTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITALSC 63
           RT+Y ++ID+ +T+  +   F S CG+V   R+ GD N   R AFVEF   + A +ALS 
Sbjct: 128 RTVYVSDIDQSVTEEGLAGLFSS-CGQVVDCRICGDPNSVLRFAFVEFSDDQGARSALSL 186

Query: 64  SGVILGSLPIRVSPSKTPVRSRSP 87
            G ++G  P+RV PSKT +   +P
Sbjct: 187 GGTMIGYYPVRVLPSKTAILPVNP 210


>AT1G53650.2 | Symbols: CID8 | CTC-interacting domain 8 |
           chr1:20029262-20031243 REVERSE LENGTH=308
          Length = 308

 Score =  146 bits (369), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 68/90 (75%), Positives = 76/90 (84%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITA 60
           MCSRTIYCTN+DK  T+ DV  FF+S CGEV RLRLLGD  HSTRIAFVEF +AESA+ A
Sbjct: 216 MCSRTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQVHSTRIAFVEFAMAESAVAA 275

Query: 61  LSCSGVILGSLPIRVSPSKTPVRSRSPRSP 90
           L+CSG++LGS PIRVSPSKTPVRSR  RSP
Sbjct: 276 LNCSGIVLGSQPIRVSPSKTPVRSRITRSP 305



 Score = 69.3 bits (168), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 4   RTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITALSC 63
           RT+Y ++ID+ +T+  +   F S CG+V   R+ GD N   R AFVEF   + A +ALS 
Sbjct: 122 RTVYVSDIDQSVTEEGLAGLFSS-CGQVVDCRICGDPNSVLRFAFVEFSDDQGARSALSL 180

Query: 64  SGVILGSLPIRVSPSKTPVRSRSP 87
            G ++G  P+RV PSKT +   +P
Sbjct: 181 GGTMIGYYPVRVLPSKTAILPVNP 204


>AT3G14450.1 | Symbols: CID9 | CTC-interacting domain 9 |
           chr3:4849788-4851601 FORWARD LENGTH=327
          Length = 327

 Score =  146 bits (369), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 67/90 (74%), Positives = 80/90 (88%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITA 60
           MC+RTIYCTNIDKK++Q+DV+NFFES CGEV RLRLLGD  HSTRIAFVEF +A+SA++A
Sbjct: 235 MCTRTIYCTNIDKKVSQADVRNFFESACGEVTRLRLLGDQLHSTRIAFVEFALADSALSA 294

Query: 61  LSCSGVILGSLPIRVSPSKTPVRSRSPRSP 90
           L+CSG+++GS PIRVSPSKTPVR R  R P
Sbjct: 295 LNCSGMVVGSQPIRVSPSKTPVRPRITRPP 324



 Score = 65.9 bits (159), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 1/84 (1%)

Query: 4   RTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITALSC 63
           RT+Y ++ID+ +T+  +   F S CG+V   R+ GD +   R AFVEF   + A  ALS 
Sbjct: 141 RTVYVSDIDQSVTEEGLAGLF-SNCGQVVDCRICGDPHSVLRFAFVEFADDQGAHEALSL 199

Query: 64  SGVILGSLPIRVSPSKTPVRSRSP 87
            G +LG  P+RV PSKT +   +P
Sbjct: 200 GGTMLGFYPVRVLPSKTAILPVNP 223


>AT3G49390.2 | Symbols: CID10 | CTC-interacting domain 10 |
           chr3:18314901-18317658 REVERSE LENGTH=353
          Length = 353

 Score =  138 bits (348), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 64/89 (71%), Positives = 76/89 (85%), Gaps = 1/89 (1%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITA 60
           MC RT+YCTNIDK++TQ D+K FFE +CGEV RLRL GD++H TRIAFVEF +AESAI A
Sbjct: 263 MCVRTVYCTNIDKRITQIDLKGFFEMLCGEVHRLRL-GDYHHQTRIAFVEFAMAESAIAA 321

Query: 61  LSCSGVILGSLPIRVSPSKTPVRSRSPRS 89
           L CSG++LG+LPIRVSPSKTPVR   PR+
Sbjct: 322 LHCSGIVLGALPIRVSPSKTPVRPHFPRA 350



 Score = 69.7 bits (169), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 53/84 (63%), Gaps = 1/84 (1%)

Query: 4   RTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITALSC 63
           RT+Y ++ID+++T+ ++   F + CG+V   R+ GD N   R AF+EF   E A  ALS 
Sbjct: 169 RTVYVSDIDQQVTEENLAGVFIN-CGQVVDCRVCGDPNSVLRFAFIEFTNEEGARAALSM 227

Query: 64  SGVILGSLPIRVSPSKTPVRSRSP 87
           SG +LG  P++V PSKT +   +P
Sbjct: 228 SGTVLGFYPLKVLPSKTAIAPVNP 251


>AT3G49390.1 | Symbols: CID10 | CTC-interacting domain 10 |
           chr3:18314901-18317658 REVERSE LENGTH=353
          Length = 353

 Score =  138 bits (348), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 64/89 (71%), Positives = 76/89 (85%), Gaps = 1/89 (1%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITA 60
           MC RT+YCTNIDK++TQ D+K FFE +CGEV RLRL GD++H TRIAFVEF +AESAI A
Sbjct: 263 MCVRTVYCTNIDKRITQIDLKGFFEMLCGEVHRLRL-GDYHHQTRIAFVEFAMAESAIAA 321

Query: 61  LSCSGVILGSLPIRVSPSKTPVRSRSPRS 89
           L CSG++LG+LPIRVSPSKTPVR   PR+
Sbjct: 322 LHCSGIVLGALPIRVSPSKTPVRPHFPRA 350



 Score = 69.7 bits (169), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 53/84 (63%), Gaps = 1/84 (1%)

Query: 4   RTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITALSC 63
           RT+Y ++ID+++T+ ++   F + CG+V   R+ GD N   R AF+EF   E A  ALS 
Sbjct: 169 RTVYVSDIDQQVTEENLAGVFIN-CGQVVDCRVCGDPNSVLRFAFIEFTNEEGARAALSM 227

Query: 64  SGVILGSLPIRVSPSKTPVRSRSP 87
           SG +LG  P++V PSKT +   +P
Sbjct: 228 SGTVLGFYPLKVLPSKTAIAPVNP 251


>AT5G24440.1 | Symbols: CID13 | CTC-interacting domain 13 |
           chr5:8345402-8347776 REVERSE LENGTH=320
          Length = 320

 Score =  135 bits (340), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 59/82 (71%), Positives = 74/82 (90%)

Query: 2   CSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITAL 61
           C +T+YCTNIDK++T+ +++NFF+++CGEV  LRLLGD  H TRIAFVEFK+AESAI+AL
Sbjct: 232 CGKTVYCTNIDKEVTKMELENFFKTVCGEVHHLRLLGDFYHQTRIAFVEFKLAESAISAL 291

Query: 62  SCSGVILGSLPIRVSPSKTPVR 83
           +CSGV+LG LPIRVSPSKTPVR
Sbjct: 292 NCSGVVLGELPIRVSPSKTPVR 313



 Score = 69.7 bits (169), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 53/87 (60%), Gaps = 1/87 (1%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITA 60
           M  RT+Y ++ID ++T+  + + F S CG+V   R+ GD+    R AF+EF  AE A +A
Sbjct: 134 MIKRTVYVSDIDNQVTEEQLASLFLS-CGQVVDCRMCGDYKSILRFAFIEFTDAEGARSA 192

Query: 61  LSCSGVILGSLPIRVSPSKTPVRSRSP 87
           L  SG + GS PIRV  SKT +   +P
Sbjct: 193 LRKSGTMFGSHPIRVFMSKTAIAPVNP 219


>AT1G32790.2 | Symbols: CID11 | CTC-interacting domain 11 |
           chr1:11875028-11877188 REVERSE LENGTH=406
          Length = 406

 Score =  134 bits (336), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/76 (82%), Positives = 69/76 (90%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITA 60
           MC+RTIYCTNIDKK+TQSDVK FFES CGEV RLRLLGD+ HSTRIAFVEF +AESAI A
Sbjct: 267 MCARTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLLGDYQHSTRIAFVEFVMAESAIAA 326

Query: 61  LSCSGVILGSLPIRVS 76
           L+CSGV+LGSLPIR S
Sbjct: 327 LNCSGVVLGSLPIRSS 342



 Score = 73.2 bits (178), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 54/84 (64%), Gaps = 1/84 (1%)

Query: 4   RTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITALSC 63
           RT+Y +++D+++T+  +   F S CG+V   R+ GD N   R AF+EF   E A+TAL+ 
Sbjct: 173 RTVYVSDLDQQVTEEQLAGLFVS-CGQVVDCRICGDPNSVLRFAFIEFTDEEGAMTALNL 231

Query: 64  SGVILGSLPIRVSPSKTPVRSRSP 87
           SG +LG  P++V PSKT +   +P
Sbjct: 232 SGTMLGFYPVKVLPSKTAIAPVNP 255


>AT4G10610.2 | Symbols: RBP37, ATRBP37 | CTC-interacting domain 12 |
           chr4:6557336-6559019 FORWARD LENGTH=326
          Length = 326

 Score =  130 bits (328), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 59/74 (79%), Positives = 68/74 (91%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITA 60
           MC+RTIYCTNIDKKLTQ+D+K FFES+CGEV RLRLLGD++H TRI FVEF +AESAI A
Sbjct: 244 MCARTIYCTNIDKKLTQTDIKLFFESVCGEVYRLRLLGDYHHPTRIGFVEFVMAESAIAA 303

Query: 61  LSCSGVILGSLPIR 74
           L+CSGV+LGSLPIR
Sbjct: 304 LNCSGVLLGSLPIR 317



 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 1/84 (1%)

Query: 4   RTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITALSC 63
           RT+Y ++ID+++T+  +   F    G+V   R+ GD N   R AF+EF     A TAL+ 
Sbjct: 150 RTVYVSDIDQQVTEEQLAGLFIGF-GQVVDCRICGDPNSVLRFAFIEFTDEVGARTALNL 208

Query: 64  SGVILGSLPIRVSPSKTPVRSRSP 87
           SG +LG  P++V PSKT +   +P
Sbjct: 209 SGTMLGFYPVKVMPSKTAIAPVNP 232