Miyakogusa Predicted Gene

Lj1g3v1073610.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1073610.1 Non Chatacterized Hit- tr|A5CA87|A5CA87_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,46.43,0.000000000002,seg,NULL; RRM,RNA recognition motif domain;
SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL; no desc,CUFF.26724.1
         (100 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G32790.1 | Symbols: CID11 | CTC-interacting domain 11 | chr1:...   132   5e-32
AT1G32790.2 | Symbols: CID11 | CTC-interacting domain 11 | chr1:...   132   6e-32
AT4G10610.1 | Symbols: RBP37, ATRBP37, CID12 | CTC-interacting d...   129   3e-31
AT4G10610.2 | Symbols: RBP37, ATRBP37 | CTC-interacting domain 1...   129   3e-31
AT3G14450.1 | Symbols: CID9 | CTC-interacting domain 9 | chr3:48...   123   2e-29
AT1G53650.2 | Symbols: CID8 | CTC-interacting domain 8 | chr1:20...   122   5e-29
AT1G53650.1 | Symbols: CID8 | CTC-interacting domain 8 | chr1:20...   122   7e-29
AT3G49390.2 | Symbols: CID10 | CTC-interacting domain 10 | chr3:...   119   3e-28
AT3G49390.1 | Symbols: CID10 | CTC-interacting domain 10 | chr3:...   119   3e-28
AT5G24440.1 | Symbols: CID13 | CTC-interacting domain 13 | chr5:...   114   1e-26

>AT1G32790.1 | Symbols: CID11 | CTC-interacting domain 11 |
           chr1:11875174-11877188 REVERSE LENGTH=358
          Length = 358

 Score =  132 bits (332), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 62/73 (84%), Positives = 68/73 (93%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAIAA 60
           MC+RTIYCTNIDKK+TQSDVK FFES CGEV RLRLLGD+ HSTRIAFVEF +AESAIAA
Sbjct: 267 MCARTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLLGDYQHSTRIAFVEFVMAESAIAA 326

Query: 61  LSCSGVILGSLPI 73
           L+CSGV+LGSLPI
Sbjct: 327 LNCSGVVLGSLPI 339



 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 4   RTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAIAALSC 63
           RT+Y +++D+++T+  +   F S CG+V   R+ GD N   R AF+EF   E A+ AL+ 
Sbjct: 173 RTVYVSDLDQQVTEEQLAGLFVS-CGQVVDCRICGDPNSVLRFAFIEFTDEEGAMTALNL 231

Query: 64  SGVILGSLPI 73
           SG +LG  P+
Sbjct: 232 SGTMLGFYPV 241


>AT1G32790.2 | Symbols: CID11 | CTC-interacting domain 11 |
           chr1:11875028-11877188 REVERSE LENGTH=406
          Length = 406

 Score =  132 bits (331), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 62/73 (84%), Positives = 68/73 (93%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAIAA 60
           MC+RTIYCTNIDKK+TQSDVK FFES CGEV RLRLLGD+ HSTRIAFVEF +AESAIAA
Sbjct: 267 MCARTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLLGDYQHSTRIAFVEFVMAESAIAA 326

Query: 61  LSCSGVILGSLPI 73
           L+CSGV+LGSLPI
Sbjct: 327 LNCSGVVLGSLPI 339



 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 4   RTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAIAALSC 63
           RT+Y +++D+++T+  +   F S CG+V   R+ GD N   R AF+EF   E A+ AL+ 
Sbjct: 173 RTVYVSDLDQQVTEEQLAGLFVS-CGQVVDCRICGDPNSVLRFAFIEFTDEEGAMTALNL 231

Query: 64  SGVILGSLPI 73
           SG +LG  P+
Sbjct: 232 SGTMLGFYPV 241


>AT4G10610.1 | Symbols: RBP37, ATRBP37, CID12 | CTC-interacting
           domain 12 | chr4:6557336-6559143 FORWARD LENGTH=336
          Length = 336

 Score =  129 bits (325), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 59/73 (80%), Positives = 68/73 (93%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAIAA 60
           MC+RTIYCTNIDKKLTQ+D+K FFES+CGEV RLRLLGD++H TRI FVEF +AESAIAA
Sbjct: 244 MCARTIYCTNIDKKLTQTDIKLFFESVCGEVYRLRLLGDYHHPTRIGFVEFVMAESAIAA 303

Query: 61  LSCSGVILGSLPI 73
           L+CSGV+LGSLPI
Sbjct: 304 LNCSGVLLGSLPI 316



 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 4   RTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAIAALSC 63
           RT+Y ++ID+++T+  +   F    G+V   R+ GD N   R AF+EF     A  AL+ 
Sbjct: 150 RTVYVSDIDQQVTEEQLAGLFIGF-GQVVDCRICGDPNSVLRFAFIEFTDEVGARTALNL 208

Query: 64  SGVILGSLPI 73
           SG +LG  P+
Sbjct: 209 SGTMLGFYPV 218


>AT4G10610.2 | Symbols: RBP37, ATRBP37 | CTC-interacting domain 12 |
           chr4:6557336-6559019 FORWARD LENGTH=326
          Length = 326

 Score =  129 bits (325), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 59/73 (80%), Positives = 68/73 (93%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAIAA 60
           MC+RTIYCTNIDKKLTQ+D+K FFES+CGEV RLRLLGD++H TRI FVEF +AESAIAA
Sbjct: 244 MCARTIYCTNIDKKLTQTDIKLFFESVCGEVYRLRLLGDYHHPTRIGFVEFVMAESAIAA 303

Query: 61  LSCSGVILGSLPI 73
           L+CSGV+LGSLPI
Sbjct: 304 LNCSGVLLGSLPI 316



 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 4   RTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAIAALSC 63
           RT+Y ++ID+++T+  +   F    G+V   R+ GD N   R AF+EF     A  AL+ 
Sbjct: 150 RTVYVSDIDQQVTEEQLAGLFIGF-GQVVDCRICGDPNSVLRFAFIEFTDEVGARTALNL 208

Query: 64  SGVILGSLPI 73
           SG +LG  P+
Sbjct: 209 SGTMLGFYPV 218


>AT3G14450.1 | Symbols: CID9 | CTC-interacting domain 9 |
           chr3:4849788-4851601 FORWARD LENGTH=327
          Length = 327

 Score =  123 bits (309), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 54/73 (73%), Positives = 67/73 (91%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAIAA 60
           MC+RTIYCTNIDKK++Q+DV+NFFES CGEV RLRLLGD  HSTRIAFVEF +A+SA++A
Sbjct: 235 MCTRTIYCTNIDKKVSQADVRNFFESACGEVTRLRLLGDQLHSTRIAFVEFALADSALSA 294

Query: 61  LSCSGVILGSLPI 73
           L+CSG+++GS PI
Sbjct: 295 LNCSGMVVGSQPI 307



 Score = 52.8 bits (125), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 4   RTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAIAALSC 63
           RT+Y ++ID+ +T+  +   F S CG+V   R+ GD +   R AFVEF   + A  ALS 
Sbjct: 141 RTVYVSDIDQSVTEEGLAGLF-SNCGQVVDCRICGDPHSVLRFAFVEFADDQGAHEALSL 199

Query: 64  SGVILGSLPI 73
            G +LG  P+
Sbjct: 200 GGTMLGFYPV 209


>AT1G53650.2 | Symbols: CID8 | CTC-interacting domain 8 |
           chr1:20029262-20031243 REVERSE LENGTH=308
          Length = 308

 Score =  122 bits (306), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 54/73 (73%), Positives = 62/73 (84%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAIAA 60
           MCSRTIYCTN+DK  T+ DV  FF+S CGEV RLRLLGD  HSTRIAFVEF +AESA+AA
Sbjct: 216 MCSRTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQVHSTRIAFVEFAMAESAVAA 275

Query: 61  LSCSGVILGSLPI 73
           L+CSG++LGS PI
Sbjct: 276 LNCSGIVLGSQPI 288



 Score = 58.2 bits (139), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 4   RTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAIAALSC 63
           RT+Y ++ID+ +T+  +   F S CG+V   R+ GD N   R AFVEF   + A +ALS 
Sbjct: 122 RTVYVSDIDQSVTEEGLAGLFSS-CGQVVDCRICGDPNSVLRFAFVEFSDDQGARSALSL 180

Query: 64  SGVILGSLPI 73
            G ++G  P+
Sbjct: 181 GGTMIGYYPV 190


>AT1G53650.1 | Symbols: CID8 | CTC-interacting domain 8 |
           chr1:20029262-20031243 REVERSE LENGTH=314
          Length = 314

 Score =  122 bits (305), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 54/73 (73%), Positives = 62/73 (84%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAIAA 60
           MCSRTIYCTN+DK  T+ DV  FF+S CGEV RLRLLGD  HSTRIAFVEF +AESA+AA
Sbjct: 222 MCSRTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQVHSTRIAFVEFAMAESAVAA 281

Query: 61  LSCSGVILGSLPI 73
           L+CSG++LGS PI
Sbjct: 282 LNCSGIVLGSQPI 294



 Score = 57.8 bits (138), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 4   RTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAIAALSC 63
           RT+Y ++ID+ +T+  +   F S CG+V   R+ GD N   R AFVEF   + A +ALS 
Sbjct: 128 RTVYVSDIDQSVTEEGLAGLFSS-CGQVVDCRICGDPNSVLRFAFVEFSDDQGARSALSL 186

Query: 64  SGVILGSLPI 73
            G ++G  P+
Sbjct: 187 GGTMIGYYPV 196


>AT3G49390.2 | Symbols: CID10 | CTC-interacting domain 10 |
           chr3:18314901-18317658 REVERSE LENGTH=353
          Length = 353

 Score =  119 bits (299), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/73 (72%), Positives = 64/73 (87%), Gaps = 1/73 (1%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAIAA 60
           MC RT+YCTNIDK++TQ D+K FFE +CGEV RLR LGD++H TRIAFVEF +AESAIAA
Sbjct: 263 MCVRTVYCTNIDKRITQIDLKGFFEMLCGEVHRLR-LGDYHHQTRIAFVEFAMAESAIAA 321

Query: 61  LSCSGVILGSLPI 73
           L CSG++LG+LPI
Sbjct: 322 LHCSGIVLGALPI 334



 Score = 61.2 bits (147), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 1/70 (1%)

Query: 4   RTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAIAALSC 63
           RT+Y ++ID+++T+ ++   F + CG+V   R+ GD N   R AF+EF   E A AALS 
Sbjct: 169 RTVYVSDIDQQVTEENLAGVFIN-CGQVVDCRVCGDPNSVLRFAFIEFTNEEGARAALSM 227

Query: 64  SGVILGSLPI 73
           SG +LG  P+
Sbjct: 228 SGTVLGFYPL 237


>AT3G49390.1 | Symbols: CID10 | CTC-interacting domain 10 |
           chr3:18314901-18317658 REVERSE LENGTH=353
          Length = 353

 Score =  119 bits (299), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/73 (72%), Positives = 64/73 (87%), Gaps = 1/73 (1%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAIAA 60
           MC RT+YCTNIDK++TQ D+K FFE +CGEV RLR LGD++H TRIAFVEF +AESAIAA
Sbjct: 263 MCVRTVYCTNIDKRITQIDLKGFFEMLCGEVHRLR-LGDYHHQTRIAFVEFAMAESAIAA 321

Query: 61  LSCSGVILGSLPI 73
           L CSG++LG+LPI
Sbjct: 322 LHCSGIVLGALPI 334



 Score = 61.2 bits (147), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 1/70 (1%)

Query: 4   RTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAIAALSC 63
           RT+Y ++ID+++T+ ++   F + CG+V   R+ GD N   R AF+EF   E A AALS 
Sbjct: 169 RTVYVSDIDQQVTEENLAGVFIN-CGQVVDCRVCGDPNSVLRFAFIEFTNEEGARAALSM 227

Query: 64  SGVILGSLPI 73
           SG +LG  P+
Sbjct: 228 SGTVLGFYPL 237


>AT5G24440.1 | Symbols: CID13 | CTC-interacting domain 13 |
           chr5:8345402-8347776 REVERSE LENGTH=320
          Length = 320

 Score =  114 bits (285), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 49/72 (68%), Positives = 64/72 (88%)

Query: 2   CSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAIAAL 61
           C +T+YCTNIDK++T+ +++NFF+++CGEV  LRLLGD  H TRIAFVEFK+AESAI+AL
Sbjct: 232 CGKTVYCTNIDKEVTKMELENFFKTVCGEVHHLRLLGDFYHQTRIAFVEFKLAESAISAL 291

Query: 62  SCSGVILGSLPI 73
           +CSGV+LG LPI
Sbjct: 292 NCSGVVLGELPI 303



 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAIAA 60
           M  RT+Y ++ID ++T+  + + F S CG+V   R+ GD+    R AF+EF  AE A +A
Sbjct: 134 MIKRTVYVSDIDNQVTEEQLASLFLS-CGQVVDCRMCGDYKSILRFAFIEFTDAEGARSA 192

Query: 61  LSCSGVILGSLPI 73
           L  SG + GS PI
Sbjct: 193 LRKSGTMFGSHPI 205