Miyakogusa Predicted Gene

Lj1g3v1063580.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1063580.1 tr|Q5I7K5|Q5I7K5_WHEAT Ribosomal protein P1
OS=Triticum aestivum PE=1 SV=1,64.29,2e-19,60S ACIDIC RIBOSOMAL
PROTEIN FAMILY MEMBER,NULL; Ribosomal_60s,Ribosomal protein 60S;
seg,NULL,CUFF.26719.1
         (112 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24510.1 | Symbols:  | 60S acidic ribosomal protein family | ...    96   7e-21
AT5G47700.2 | Symbols:  | 60S acidic ribosomal protein family | ...    87   2e-18
AT5G47700.1 | Symbols:  | 60S acidic ribosomal protein family | ...    87   2e-18
AT1G01100.3 | Symbols:  | 60S acidic ribosomal protein family | ...    86   6e-18
AT1G01100.4 | Symbols:  | 60S acidic ribosomal protein family | ...    86   6e-18
AT1G01100.2 | Symbols:  | 60S acidic ribosomal protein family | ...    86   6e-18
AT1G01100.1 | Symbols:  | 60S acidic ribosomal protein family | ...    86   6e-18
AT4G00810.2 | Symbols:  | 60S acidic ribosomal protein family | ...    84   2e-17
AT4G00810.1 | Symbols:  | 60S acidic ribosomal protein family | ...    84   2e-17

>AT5G24510.1 | Symbols:  | 60S acidic ribosomal protein family |
          chr5:8369295-8369866 REVERSE LENGTH=111
          Length = 111

 Score = 95.5 bits (236), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 43/61 (70%), Positives = 49/61 (80%)

Query: 1  MSAGELGCIYATLILHDDGIPITAEKINTLLKAANVTVESYWPSLFAKLAQNKNVDDLVL 60
          MS  EL C YA LILHDDGI ITAE I+ L+K ANV VESYWPSLFAKL + KN+DDL++
Sbjct: 1  MSTSELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLIM 60

Query: 61 N 61
          N
Sbjct: 61 N 61


>AT5G47700.2 | Symbols:  | 60S acidic ribosomal protein family |
          chr5:19328019-19328724 REVERSE LENGTH=113
          Length = 113

 Score = 87.0 bits (214), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 38/60 (63%), Positives = 49/60 (81%)

Query: 2  SAGELGCIYATLILHDDGIPITAEKINTLLKAANVTVESYWPSLFAKLAQNKNVDDLVLN 61
          + GEL C YA +IL D+GI ITA+KI TL+KAA VT+ESYWP LFAK+A+ +NV DL++N
Sbjct: 3  TVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMN 62


>AT5G47700.1 | Symbols:  | 60S acidic ribosomal protein family |
          chr5:19328019-19328724 REVERSE LENGTH=113
          Length = 113

 Score = 87.0 bits (214), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 38/60 (63%), Positives = 49/60 (81%)

Query: 2  SAGELGCIYATLILHDDGIPITAEKINTLLKAANVTVESYWPSLFAKLAQNKNVDDLVLN 61
          + GEL C YA +IL D+GI ITA+KI TL+KAA VT+ESYWP LFAK+A+ +NV DL++N
Sbjct: 3  TVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMN 62


>AT1G01100.3 | Symbols:  | 60S acidic ribosomal protein family |
          chr1:50284-50954 REVERSE LENGTH=96
          Length = 96

 Score = 85.9 bits (211), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 37/60 (61%), Positives = 49/60 (81%)

Query: 2  SAGELGCIYATLILHDDGIPITAEKINTLLKAANVTVESYWPSLFAKLAQNKNVDDLVLN 61
          + GEL C YA +IL D+GI ITA+KI TL+KAA V++ESYWP LFAK+A+ +NV DL++N
Sbjct: 3  TVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMN 62


>AT1G01100.4 | Symbols:  | 60S acidic ribosomal protein family |
          chr1:50284-50954 REVERSE LENGTH=112
          Length = 112

 Score = 85.5 bits (210), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 37/60 (61%), Positives = 49/60 (81%)

Query: 2  SAGELGCIYATLILHDDGIPITAEKINTLLKAANVTVESYWPSLFAKLAQNKNVDDLVLN 61
          + GEL C YA +IL D+GI ITA+KI TL+KAA V++ESYWP LFAK+A+ +NV DL++N
Sbjct: 3  TVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMN 62


>AT1G01100.2 | Symbols:  | 60S acidic ribosomal protein family |
          chr1:50284-50954 REVERSE LENGTH=112
          Length = 112

 Score = 85.5 bits (210), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 37/60 (61%), Positives = 49/60 (81%)

Query: 2  SAGELGCIYATLILHDDGIPITAEKINTLLKAANVTVESYWPSLFAKLAQNKNVDDLVLN 61
          + GEL C YA +IL D+GI ITA+KI TL+KAA V++ESYWP LFAK+A+ +NV DL++N
Sbjct: 3  TVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMN 62


>AT1G01100.1 | Symbols:  | 60S acidic ribosomal protein family |
          chr1:50284-50954 REVERSE LENGTH=112
          Length = 112

 Score = 85.5 bits (210), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 37/60 (61%), Positives = 49/60 (81%)

Query: 2  SAGELGCIYATLILHDDGIPITAEKINTLLKAANVTVESYWPSLFAKLAQNKNVDDLVLN 61
          + GEL C YA +IL D+GI ITA+KI TL+KAA V++ESYWP LFAK+A+ +NV DL++N
Sbjct: 3  TVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMN 62


>AT4G00810.2 | Symbols:  | 60S acidic ribosomal protein family |
          chr4:346179-346957 REVERSE LENGTH=113
          Length = 113

 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 48/60 (80%)

Query: 2  SAGELGCIYATLILHDDGIPITAEKINTLLKAANVTVESYWPSLFAKLAQNKNVDDLVLN 61
          + GEL C YA +IL D+GI IT++KI TL+KAA V +ESYWP LFAK+A+ +NV DL++N
Sbjct: 3  TVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMN 62


>AT4G00810.1 | Symbols:  | 60S acidic ribosomal protein family |
          chr4:346179-346957 REVERSE LENGTH=113
          Length = 113

 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 48/60 (80%)

Query: 2  SAGELGCIYATLILHDDGIPITAEKINTLLKAANVTVESYWPSLFAKLAQNKNVDDLVLN 61
          + GEL C YA +IL D+GI IT++KI TL+KAA V +ESYWP LFAK+A+ +NV DL++N
Sbjct: 3  TVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMN 62