Miyakogusa Predicted Gene
- Lj1g3v1063550.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1063550.1 Non Chatacterized Hit- tr|C5XL49|C5XL49_SORBI
Putative uncharacterized protein Sb03g002180
OS=Sorghu,46.07,0.000000000008,RRM,RNA recognition motif domain;
SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL; RRM_1,RNA
recogni,CUFF.26718.1
(314 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G49390.2 | Symbols: CID10 | CTC-interacting domain 10 | chr3:... 330 8e-91
AT3G49390.1 | Symbols: CID10 | CTC-interacting domain 10 | chr3:... 330 8e-91
AT4G10610.1 | Symbols: RBP37, ATRBP37, CID12 | CTC-interacting d... 322 1e-88
AT4G10610.2 | Symbols: RBP37, ATRBP37 | CTC-interacting domain 1... 322 2e-88
AT1G32790.2 | Symbols: CID11 | CTC-interacting domain 11 | chr1:... 320 9e-88
AT1G32790.1 | Symbols: CID11 | CTC-interacting domain 11 | chr1:... 318 2e-87
AT3G14450.1 | Symbols: CID9 | CTC-interacting domain 9 | chr3:48... 276 2e-74
AT1G53650.2 | Symbols: CID8 | CTC-interacting domain 8 | chr1:20... 267 6e-72
AT5G24440.1 | Symbols: CID13 | CTC-interacting domain 13 | chr5:... 250 1e-66
AT1G53650.1 | Symbols: CID8 | CTC-interacting domain 8 | chr1:20... 248 4e-66
AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 | chr1:1... 48 8e-06
>AT3G49390.2 | Symbols: CID10 | CTC-interacting domain 10 |
chr3:18314901-18317658 REVERSE LENGTH=353
Length = 353
Score = 330 bits (846), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 175/318 (55%), Positives = 214/318 (67%), Gaps = 25/318 (7%)
Query: 1 MAVAENAGAKIGSSGQNLDNNNTVVSAEDSSEVEKSKTRTDQNLSNGGFNHEHHPGNI-A 59
MAVAENAG K+ SSGQNLDNNNT SA +E K D + P I +
Sbjct: 1 MAVAENAGVKVDSSGQNLDNNNTAASA---TETTKPPCPDDDQSPK---SDSSTPLTIDS 54
Query: 60 VPNGNYSYNAQVGQMQANGVQNQQLVMNNDGYGENGDESFKRDMRDLAELLSKLNPMAEE 119
P + N + Q V +G+ NG+ +++DLA+ SKLNPMA+E
Sbjct: 55 TPETDDRIN-----------ETAQKVQTLNGFSGNGERDNNGEIKDLADAFSKLNPMAQE 103
Query: 120 FVPPSLTNSH-GYLAGPNAGFGYPNNFILQNDFGQTN---RRRKNVYNSGKRRIFHKIEM 175
FVPPSL S G L G G+ NNF N RR+ + GKRR+ + +
Sbjct: 104 FVPPSLARSQSGVLRN---GLGFTNNFAAPPKLADGNDHFPRRRRSFGQGKRRMNKRTSL 160
Query: 176 EKRDEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFVEFTDEEG 235
++D++IRRTVYVSDIDQ VTEE LA +F+NCGQVVDCRVCGDPNS+LRFAF+EFT+EEG
Sbjct: 161 AQKDDVIRRTVYVSDIDQQVTEENLAGVFINCGQVVDCRVCGDPNSVLRFAFIEFTNEEG 220
Query: 236 ARTALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQS 295
AR AL++SGT+LG+YPL+VLPSKTAIAPVNPTFLPRSEDEREMC RT+YCTNIDK++TQ
Sbjct: 221 ARAALSMSGTVLGFYPLKVLPSKTAIAPVNPTFLPRSEDEREMCVRTVYCTNIDKRITQI 280
Query: 296 DVKNFFESICGEVQRLRL 313
D+K FFE +CGEV RLRL
Sbjct: 281 DLKGFFEMLCGEVHRLRL 298
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 59/99 (59%), Gaps = 6/99 (6%)
Query: 176 EKRDEMIRRTVYVSDIDQLVTEEQLAALF-LNCGQVVDCRVCGDPNSILRFAFVEFTDEE 234
E EM RTVY ++ID+ +T+ L F + CG+V R+ GD + R AFVEF E
Sbjct: 258 EDEREMCVRTVYCTNIDKRITQIDLKGFFEMLCGEVHRLRL-GDYHHQTRIAFVEFAMAE 316
Query: 235 GARTALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSE 273
A AL+ SG +LG P+RV PSKT PV P F PR+E
Sbjct: 317 SAIAALHCSGIVLGALPIRVSPSKT---PVRPHF-PRAE 351
>AT3G49390.1 | Symbols: CID10 | CTC-interacting domain 10 |
chr3:18314901-18317658 REVERSE LENGTH=353
Length = 353
Score = 330 bits (846), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 175/318 (55%), Positives = 214/318 (67%), Gaps = 25/318 (7%)
Query: 1 MAVAENAGAKIGSSGQNLDNNNTVVSAEDSSEVEKSKTRTDQNLSNGGFNHEHHPGNI-A 59
MAVAENAG K+ SSGQNLDNNNT SA +E K D + P I +
Sbjct: 1 MAVAENAGVKVDSSGQNLDNNNTAASA---TETTKPPCPDDDQSPK---SDSSTPLTIDS 54
Query: 60 VPNGNYSYNAQVGQMQANGVQNQQLVMNNDGYGENGDESFKRDMRDLAELLSKLNPMAEE 119
P + N + Q V +G+ NG+ +++DLA+ SKLNPMA+E
Sbjct: 55 TPETDDRIN-----------ETAQKVQTLNGFSGNGERDNNGEIKDLADAFSKLNPMAQE 103
Query: 120 FVPPSLTNSH-GYLAGPNAGFGYPNNFILQNDFGQTN---RRRKNVYNSGKRRIFHKIEM 175
FVPPSL S G L G G+ NNF N RR+ + GKRR+ + +
Sbjct: 104 FVPPSLARSQSGVLRN---GLGFTNNFAAPPKLADGNDHFPRRRRSFGQGKRRMNKRTSL 160
Query: 176 EKRDEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFVEFTDEEG 235
++D++IRRTVYVSDIDQ VTEE LA +F+NCGQVVDCRVCGDPNS+LRFAF+EFT+EEG
Sbjct: 161 AQKDDVIRRTVYVSDIDQQVTEENLAGVFINCGQVVDCRVCGDPNSVLRFAFIEFTNEEG 220
Query: 236 ARTALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQS 295
AR AL++SGT+LG+YPL+VLPSKTAIAPVNPTFLPRSEDEREMC RT+YCTNIDK++TQ
Sbjct: 221 ARAALSMSGTVLGFYPLKVLPSKTAIAPVNPTFLPRSEDEREMCVRTVYCTNIDKRITQI 280
Query: 296 DVKNFFESICGEVQRLRL 313
D+K FFE +CGEV RLRL
Sbjct: 281 DLKGFFEMLCGEVHRLRL 298
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 59/99 (59%), Gaps = 6/99 (6%)
Query: 176 EKRDEMIRRTVYVSDIDQLVTEEQLAALF-LNCGQVVDCRVCGDPNSILRFAFVEFTDEE 234
E EM RTVY ++ID+ +T+ L F + CG+V R+ GD + R AFVEF E
Sbjct: 258 EDEREMCVRTVYCTNIDKRITQIDLKGFFEMLCGEVHRLRL-GDYHHQTRIAFVEFAMAE 316
Query: 235 GARTALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSE 273
A AL+ SG +LG P+RV PSKT PV P F PR+E
Sbjct: 317 SAIAALHCSGIVLGALPIRVSPSKT---PVRPHF-PRAE 351
>AT4G10610.1 | Symbols: RBP37, ATRBP37, CID12 | CTC-interacting
domain 12 | chr4:6557336-6559143 FORWARD LENGTH=336
Length = 336
Score = 322 bits (826), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 156/226 (69%), Positives = 184/226 (81%), Gaps = 7/226 (3%)
Query: 94 NGDESFKRDMRDLAELLSKLNPMAEEFVPPSLTNS-----HGYLAGPNAGFGYPNNFILQ 148
+G ESFKRDMR+L ELLSKLNPMA+EF+PPSLT +G N GF NF +
Sbjct: 57 DGGESFKRDMRELHELLSKLNPMAKEFIPPSLTKPVVNGFNGGFFAVNNGFVAAGNFPVN 116
Query: 149 NDFGQTNRRRKNVYNSGKRRIFHKIEMEKRDEMIRRTVYVSDIDQLVTEEQLAALFLNCG 208
D + RR+K+ GKRR+ + + +R+E+IRRTVYVSDIDQ VTEEQLA LF+ G
Sbjct: 117 ED--GSFRRKKSFGQQGKRRMNPRTSLAQREEIIRRTVYVSDIDQQVTEEQLAGLFIGFG 174
Query: 209 QVVDCRVCGDPNSILRFAFVEFTDEEGARTALNLSGTMLGYYPLRVLPSKTAIAPVNPTF 268
QVVDCR+CGDPNS+LRFAF+EFTDE GARTALNLSGTMLG+YP++V+PSKTAIAPVNPTF
Sbjct: 175 QVVDCRICGDPNSVLRFAFIEFTDEVGARTALNLSGTMLGFYPVKVMPSKTAIAPVNPTF 234
Query: 269 LPRSEDEREMCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLL 314
LPR+EDEREMC+RTIYCTNIDKKLTQ+D+K FFES+CGEV RLRLL
Sbjct: 235 LPRTEDEREMCARTIYCTNIDKKLTQTDIKLFFESVCGEVYRLRLL 280
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 56/99 (56%), Gaps = 4/99 (4%)
Query: 176 EKRDEMIRRTVYVSDIDQLVTEEQLAALFLN-CGQVVDCRVCGDPNSILRFAFVEFTDEE 234
E EM RT+Y ++ID+ +T+ + F + CG+V R+ GD + R FVEF E
Sbjct: 239 EDEREMCARTIYCTNIDKKLTQTDIKLFFESVCGEVYRLRLLGDYHHPTRIGFVEFVMAE 298
Query: 235 GARTALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSE 273
A ALN SG +LG P+RV PSKT PV +PR +
Sbjct: 299 SAIAALNCSGVLLGSLPIRVSPSKT---PVRSRAIPRHQ 334
>AT4G10610.2 | Symbols: RBP37, ATRBP37 | CTC-interacting domain 12 |
chr4:6557336-6559019 FORWARD LENGTH=326
Length = 326
Score = 322 bits (826), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 156/226 (69%), Positives = 184/226 (81%), Gaps = 7/226 (3%)
Query: 94 NGDESFKRDMRDLAELLSKLNPMAEEFVPPSLTNS-----HGYLAGPNAGFGYPNNFILQ 148
+G ESFKRDMR+L ELLSKLNPMA+EF+PPSLT +G N GF NF +
Sbjct: 57 DGGESFKRDMRELHELLSKLNPMAKEFIPPSLTKPVVNGFNGGFFAVNNGFVAAGNFPVN 116
Query: 149 NDFGQTNRRRKNVYNSGKRRIFHKIEMEKRDEMIRRTVYVSDIDQLVTEEQLAALFLNCG 208
D + RR+K+ GKRR+ + + +R+E+IRRTVYVSDIDQ VTEEQLA LF+ G
Sbjct: 117 ED--GSFRRKKSFGQQGKRRMNPRTSLAQREEIIRRTVYVSDIDQQVTEEQLAGLFIGFG 174
Query: 209 QVVDCRVCGDPNSILRFAFVEFTDEEGARTALNLSGTMLGYYPLRVLPSKTAIAPVNPTF 268
QVVDCR+CGDPNS+LRFAF+EFTDE GARTALNLSGTMLG+YP++V+PSKTAIAPVNPTF
Sbjct: 175 QVVDCRICGDPNSVLRFAFIEFTDEVGARTALNLSGTMLGFYPVKVMPSKTAIAPVNPTF 234
Query: 269 LPRSEDEREMCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLL 314
LPR+EDEREMC+RTIYCTNIDKKLTQ+D+K FFES+CGEV RLRLL
Sbjct: 235 LPRTEDEREMCARTIYCTNIDKKLTQTDIKLFFESVCGEVYRLRLL 280
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 176 EKRDEMIRRTVYVSDIDQLVTEEQLAALFLN-CGQVVDCRVCGDPNSILRFAFVEFTDEE 234
E EM RT+Y ++ID+ +T+ + F + CG+V R+ GD + R FVEF E
Sbjct: 239 EDEREMCARTIYCTNIDKKLTQTDIKLFFESVCGEVYRLRLLGDYHHPTRIGFVEFVMAE 298
Query: 235 GARTALNLSGTMLGYYPLR 253
A ALN SG +LG P+R
Sbjct: 299 SAIAALNCSGVLLGSLPIR 317
>AT1G32790.2 | Symbols: CID11 | CTC-interacting domain 11 |
chr1:11875028-11877188 REVERSE LENGTH=406
Length = 406
Score = 320 bits (820), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 159/233 (68%), Positives = 181/233 (77%), Gaps = 11/233 (4%)
Query: 92 GENGDESFKRDMRDLAELLSKLNPMAEEFVPPSLTNSHGYLAGPNAGFGYPNNFILQNDF 151
G +G ESFKRDMR+L EL SKLNPMAEEFVPPSL N G F +F N F
Sbjct: 72 GVDGGESFKRDMRELQELFSKLNPMAEEFVPPSL-NKQGGNGVNGGFFTSAGSFFRNNGF 130
Query: 152 GQTNR----------RRKNVYNSGKRRIFHKIEMEKRDEMIRRTVYVSDIDQLVTEEQLA 201
T RRK + GKRR+ + M +R+++IRRTVYVSD+DQ VTEEQLA
Sbjct: 131 AGTGNGGYGNENGGFRRKKSFGQGKRRMNARTSMAQREDVIRRTVYVSDLDQQVTEEQLA 190
Query: 202 ALFLNCGQVVDCRVCGDPNSILRFAFVEFTDEEGARTALNLSGTMLGYYPLRVLPSKTAI 261
LF++CGQVVDCR+CGDPNS+LRFAF+EFTDEEGA TALNLSGTMLG+YP++VLPSKTAI
Sbjct: 191 GLFVSCGQVVDCRICGDPNSVLRFAFIEFTDEEGAMTALNLSGTMLGFYPVKVLPSKTAI 250
Query: 262 APVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLL 314
APVNPTFLPR+EDEREMC+RTIYCTNIDKK+TQSDVK FFES CGEV RLRLL
Sbjct: 251 APVNPTFLPRTEDEREMCARTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLL 303
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 176 EKRDEMIRRTVYVSDIDQLVTEEQLAALFLN-CGQVVDCRVCGDPNSILRFAFVEFTDEE 234
E EM RT+Y ++ID+ VT+ + F + CG+V R+ GD R AFVEF E
Sbjct: 262 EDEREMCARTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLLGDYQHSTRIAFVEFVMAE 321
Query: 235 GARTALNLSGTMLGYYPLR 253
A ALN SG +LG P+R
Sbjct: 322 SAIAALNCSGVVLGSLPIR 340
>AT1G32790.1 | Symbols: CID11 | CTC-interacting domain 11 |
chr1:11875174-11877188 REVERSE LENGTH=358
Length = 358
Score = 318 bits (816), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 159/233 (68%), Positives = 181/233 (77%), Gaps = 11/233 (4%)
Query: 92 GENGDESFKRDMRDLAELLSKLNPMAEEFVPPSLTNSHGYLAGPNAGFGYPNNFILQNDF 151
G +G ESFKRDMR+L EL SKLNPMAEEFVPPSL N G F +F N F
Sbjct: 72 GVDGGESFKRDMRELQELFSKLNPMAEEFVPPSL-NKQGGNGVNGGFFTSAGSFFRNNGF 130
Query: 152 GQTNR----------RRKNVYNSGKRRIFHKIEMEKRDEMIRRTVYVSDIDQLVTEEQLA 201
T RRK + GKRR+ + M +R+++IRRTVYVSD+DQ VTEEQLA
Sbjct: 131 AGTGNGGYGNENGGFRRKKSFGQGKRRMNARTSMAQREDVIRRTVYVSDLDQQVTEEQLA 190
Query: 202 ALFLNCGQVVDCRVCGDPNSILRFAFVEFTDEEGARTALNLSGTMLGYYPLRVLPSKTAI 261
LF++CGQVVDCR+CGDPNS+LRFAF+EFTDEEGA TALNLSGTMLG+YP++VLPSKTAI
Sbjct: 191 GLFVSCGQVVDCRICGDPNSVLRFAFIEFTDEEGAMTALNLSGTMLGFYPVKVLPSKTAI 250
Query: 262 APVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLL 314
APVNPTFLPR+EDEREMC+RTIYCTNIDKK+TQSDVK FFES CGEV RLRLL
Sbjct: 251 APVNPTFLPRTEDEREMCARTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLL 303
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 176 EKRDEMIRRTVYVSDIDQLVTEEQLAALFLN-CGQVVDCRVCGDPNSILRFAFVEFTDEE 234
E EM RT+Y ++ID+ VT+ + F + CG+V R+ GD R AFVEF E
Sbjct: 262 EDEREMCARTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLLGDYQHSTRIAFVEFVMAE 321
Query: 235 GARTALNLSGTMLGYYPLRVLPSKTAIAPVNP 266
A ALN SG +LG P+RV PSKT + P +P
Sbjct: 322 SAIAALNCSGVVLGSLPIRVSPSKTPVRPRSP 353
>AT3G14450.1 | Symbols: CID9 | CTC-interacting domain 9 |
chr3:4849788-4851601 FORWARD LENGTH=327
Length = 327
Score = 276 bits (705), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 135/229 (58%), Positives = 162/229 (70%), Gaps = 22/229 (9%)
Query: 102 DMRDLAELLSKLNPMAEEFVPPSLTNSHGYLAGPNAGFGYPNNFILQNDFGQT------- 154
DM L + KLNP+A+EF P Y N N F+ +DF T
Sbjct: 49 DMHKLVAMFKKLNPLAKEFFP------SYYDPKKNNQVAKANQFLPADDFETTKKQSGEE 102
Query: 155 ---------NRRRKNVYNSGKRRIFHKIEMEKRDEMIRRTVYVSDIDQLVTEEQLAALFL 205
N R++ Y+ G+RR+ +I +R++ IRRTVYVSDIDQ VTEE LA LF
Sbjct: 103 FDLDAKKDDNTRKRRNYSQGRRRLTGRISKAQREDSIRRTVYVSDIDQSVTEEGLAGLFS 162
Query: 206 NCGQVVDCRVCGDPNSILRFAFVEFTDEEGARTALNLSGTMLGYYPLRVLPSKTAIAPVN 265
NCGQVVDCR+CGDP+S+LRFAFVEF D++GA AL+L GTMLG+YP+RVLPSKTAI PVN
Sbjct: 163 NCGQVVDCRICGDPHSVLRFAFVEFADDQGAHEALSLGGTMLGFYPVRVLPSKTAILPVN 222
Query: 266 PTFLPRSEDEREMCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLL 314
PTFLPRSEDEREMC+RTIYCTNIDKK++Q+DV+NFFES CGEV RLRLL
Sbjct: 223 PTFLPRSEDEREMCTRTIYCTNIDKKVSQADVRNFFESACGEVTRLRLL 271
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 176 EKRDEMIRRTVYVSDIDQLVTEEQLAALFLN-CGQVVDCRVCGDPNSILRFAFVEFTDEE 234
E EM RT+Y ++ID+ V++ + F + CG+V R+ GD R AFVEF +
Sbjct: 230 EDEREMCTRTIYCTNIDKKVSQADVRNFFESACGEVTRLRLLGDQLHSTRIAFVEFALAD 289
Query: 235 GARTALNLSGTMLGYYPLRVLPSKTAIAP 263
A +ALN SG ++G P+RV PSKT + P
Sbjct: 290 SALSALNCSGMVVGSQPIRVSPSKTPVRP 318
>AT1G53650.2 | Symbols: CID8 | CTC-interacting domain 8 |
chr1:20029262-20031243 REVERSE LENGTH=308
Length = 308
Score = 267 bits (683), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 129/214 (60%), Positives = 161/214 (75%), Gaps = 13/214 (6%)
Query: 103 MRDLAELLSKLNPMAEEFVPPSLTNSHGYLAGPNAGFGYPNNFILQ-NDFGQTNRRRKNV 161
M+ L + KLNP A+EF P N++ ++F++ G+ N++R+N
Sbjct: 50 MKKLVAMFKKLNPEAKEFFPSYKRNTN-----------QSDDFVIAIKPSGEDNKKRRNN 98
Query: 162 YNSGKR-RIFHKIEMEKRDEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPN 220
YN G+R R+ + +R++ IRRTVYVSDIDQ VTEE LA LF +CGQVVDCR+CGDPN
Sbjct: 99 YNQGRRVRLPGRASKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPN 158
Query: 221 SILRFAFVEFTDEEGARTALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCS 280
S+LRFAFVEF+D++GAR+AL+L GTM+GYYP+RVLPSKTAI PVNPTFLPRSEDEREMCS
Sbjct: 159 SVLRFAFVEFSDDQGARSALSLGGTMIGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 218
Query: 281 RTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLL 314
RTIYCTN+DK T+ DV FF+S CGEV RLRLL
Sbjct: 219 RTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLL 252
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 176 EKRDEMIRRTVYVSDIDQLVTEEQLAALFLN-CGQVVDCRVCGDPNSILRFAFVEFTDEE 234
E EM RT+Y +++D+ TE+ + F + CG+V R+ GD R AFVEF E
Sbjct: 211 EDEREMCSRTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQVHSTRIAFVEFAMAE 270
Query: 235 GARTALNLSGTMLGYYPLRVLPSKTAI 261
A ALN SG +LG P+RV PSKT +
Sbjct: 271 SAVAALNCSGIVLGSQPIRVSPSKTPV 297
>AT5G24440.1 | Symbols: CID13 | CTC-interacting domain 13 |
chr5:8345402-8347776 REVERSE LENGTH=320
Length = 320
Score = 250 bits (638), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 145/317 (45%), Positives = 188/317 (59%), Gaps = 53/317 (16%)
Query: 1 MAVAENAGAKIGSSG-QNLDNNNTVVSAEDSSEVEKSKTRTDQNLSNGGFNHEHHPGNIA 59
MAVAEN G K+ SS QN+DNN T S VE + +D
Sbjct: 1 MAVAENVGVKVDSSNNQNIDNNTT-------SLVETKPSCSDDQ---------------- 37
Query: 60 VPNGNYSYNAQVGQMQANGVQNQQLVMNNDGYGENGDESFKRDMRDLAELLSKLNPMAEE 119
P S V+ N+ + + K + +S LNPMA+E
Sbjct: 38 TPKSKSS------------------VLTNELIQRTSEVNLKSE-------ISHLNPMAKE 72
Query: 120 FVPPSLTNSHGYLAGPNAGFGYPNNFILQNDF--GQTNRRRKNVYNSGKRRIFHKIEMEK 177
FVP L +H N F + N+F Q F GQ R+N + G+ I K + +
Sbjct: 73 FVPSFLAQTHHSEFWGNR-FWFTNHFPKQTIFLIGQFATMRRN-FGKGRPWITKKTNLVQ 130
Query: 178 RDEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFVEFTDEEGAR 237
++MI+RTVYVSDID VTEEQLA+LFL+CGQVVDCR+CGD SILRFAF+EFTD EGAR
Sbjct: 131 NEDMIKRTVYVSDIDNQVTEEQLASLFLSCGQVVDCRMCGDYKSILRFAFIEFTDAEGAR 190
Query: 238 TALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQSDV 297
+AL SGTM G +P+RV SKTAIAPVNP+FLP+S+DE E C +T+YCTNIDK++T+ ++
Sbjct: 191 SALRKSGTMFGSHPIRVFMSKTAIAPVNPSFLPQSKDELEKCGKTVYCTNIDKEVTKMEL 250
Query: 298 KNFFESICGEVQRLRLL 314
+NFF+++CGEV LRLL
Sbjct: 251 ENFFKTVCGEVHHLRLL 267
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
Query: 176 EKRDEMIR--RTVYVSDIDQLVTEEQLAALFLN-CGQVVDCRVCGDPNSILRFAFVEFTD 232
+ +DE+ + +TVY ++ID+ VT+ +L F CG+V R+ GD R AFVEF
Sbjct: 224 QSKDELEKCGKTVYCTNIDKEVTKMELENFFKTVCGEVHHLRLLGDFYHQTRIAFVEFKL 283
Query: 233 EEGARTALNLSGTMLGYYPLRVLPSKTAI 261
E A +ALN SG +LG P+RV PSKT +
Sbjct: 284 AESAISALNCSGVVLGELPIRVSPSKTPV 312
>AT1G53650.1 | Symbols: CID8 | CTC-interacting domain 8 |
chr1:20029262-20031243 REVERSE LENGTH=314
Length = 314
Score = 248 bits (632), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 125/220 (56%), Positives = 156/220 (70%), Gaps = 19/220 (8%)
Query: 103 MRDLAELLSKLNPMAEEFVPPSLTNSHGYLAGPNAGFGYPNNFILQ-NDFGQTNRR---- 157
M+ L + KLNP A+EF P N++ ++F++ G+ N++
Sbjct: 50 MKKLVAMFKKLNPEAKEFFPSYKRNTN-----------QSDDFVIAIKPSGEDNKKVAIN 98
Query: 158 ---RKNVYNSGKRRIFHKIEMEKRDEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCR 214
R N + R+ + +R++ IRRTVYVSDIDQ VTEE LA LF +CGQVVDCR
Sbjct: 99 RRRRNNYNQGRRVRLPGRASKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQVVDCR 158
Query: 215 VCGDPNSILRFAFVEFTDEEGARTALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSED 274
+CGDPNS+LRFAFVEF+D++GAR+AL+L GTM+GYYP+RVLPSKTAI PVNPTFLPRSED
Sbjct: 159 ICGDPNSVLRFAFVEFSDDQGARSALSLGGTMIGYYPVRVLPSKTAILPVNPTFLPRSED 218
Query: 275 EREMCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLL 314
EREMCSRTIYCTN+DK T+ DV FF+S CGEV RLRLL
Sbjct: 219 EREMCSRTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLL 258
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 176 EKRDEMIRRTVYVSDIDQLVTEEQLAALFLN-CGQVVDCRVCGDPNSILRFAFVEFTDEE 234
E EM RT+Y +++D+ TE+ + F + CG+V R+ GD R AFVEF E
Sbjct: 217 EDEREMCSRTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQVHSTRIAFVEFAMAE 276
Query: 235 GARTALNLSGTMLGYYPLRVLPSKTAI 261
A ALN SG +LG P+RV PSKT +
Sbjct: 277 SAVAALNCSGIVLGSQPIRVSPSKTPV 303
>AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 |
chr1:12433356-12434735 REVERSE LENGTH=407
Length = 407
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 13/121 (10%)
Query: 183 RRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILR-FAFVEFTDEEGARTALN 241
R V+V ++D+ + +QL +F G+V+ C+V D + + + + FV+F + TA N
Sbjct: 30 RGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACN 89
Query: 242 L-SGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQSDVKNF 300
+GT++ + V P F+ R + ++ +Y N+ + T +D+K
Sbjct: 90 FHNGTLIRNQHIHVCP-----------FVSRGQWDKSRVFTNVYVKNLVETATDADLKRL 138
Query: 301 F 301
F
Sbjct: 139 F 139