Miyakogusa Predicted Gene

Lj1g3v1032200.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1032200.1 tr|A8JIG5|A8JIG5_CHLRE Predicted protein
OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_180727 PE=4
SV=1,40.41,4e-18,Rhodanese,Rhodanese-like domain; Rhodanese Homology
Domain,Rhodanese-like domain; RHODANESE_3,Rhodan,CUFF.26677.1
         (235 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G27700.1 | Symbols:  | Rhodanese/Cell cycle control phosphata...   258   3e-69
AT3G08920.1 | Symbols:  | Rhodanese/Cell cycle control phosphata...    48   5e-06

>AT4G27700.1 | Symbols:  | Rhodanese/Cell cycle control phosphatase
           superfamily protein | chr4:13826541-13827673 REVERSE
           LENGTH=224
          Length = 224

 Score =  258 bits (658), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 127/176 (72%), Positives = 137/176 (77%)

Query: 55  RGLTIQSXXXXXXXXPAEEDWKIKRELLLQKRVRSVDAKEAFRLQKENNFVILDVRPEAE 114
           + L IQ          AE DW+ KRELLL+KRVRSVD KEA RLQKENNFVILDVRPEAE
Sbjct: 42  KTLKIQCTSTKPAKPAAEVDWRQKRELLLEKRVRSVDVKEAQRLQKENNFVILDVRPEAE 101

Query: 115 FKEAHPPDAINVQIYRLIKEWTAWDXXXXXXXXXXXXXXXTEENPEFIQSVEAKLNKNAK 174
           +K  HPP AINV++YRLI+EWTAWD               TEENPEFIQSVEAKL+K AK
Sbjct: 102 YKAGHPPGAINVEMYRLIREWTAWDIARRLGFAFFGIFSGTEENPEFIQSVEAKLDKEAK 161

Query: 175 IIVACSSGGTMKPTQNLPEGQQSRSLIAAYLLVLNGYTNVFHLEGGLYSWFKEDLP 230
           IIVACSS GTMKPTQNLPEGQQSRSLIAAYLLVLNGY NVFHLEGG+Y+W KE LP
Sbjct: 162 IIVACSSAGTMKPTQNLPEGQQSRSLIAAYLLVLNGYKNVFHLEGGIYTWGKEGLP 217


>AT3G08920.1 | Symbols:  | Rhodanese/Cell cycle control phosphatase
           superfamily protein | chr3:2712274-2713117 FORWARD
           LENGTH=214
          Length = 214

 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 29/164 (17%)

Query: 79  RELLLQKRVRSVDAKEAFRLQKENNFVILDVRPEAEFKEAHPPDAINVQIY--------- 129
           +EL+L  +VR+V+ KEA  +     +++LDVRP  E ++A    +++V ++         
Sbjct: 37  KELILSGKVRAVEPKEANAVVASEGYILLDVRPAWEREKARVKGSLHVPLFVEDPDNGPI 96

Query: 130 RLIKEWTAWDXXXXXXXXXXXXXXXTEENPEF-IQSVEAKLNKNAKIIVACSSGGTMKPT 188
            L+K+W                   T  N EF ++ VEA  +K +K++V C         
Sbjct: 97  TLLKKWIHLG-----YIGLWTGQRFTMINDEFALRVVEAVPDKESKVLVVC--------- 142

Query: 189 QNLPEGQQSRSLIAAYLLVLNGYTNVFHLEGGLYSWFKEDLPSV 232
                G+  RSL A   L   GY ++  L GG     + D P +
Sbjct: 143 -----GEGLRSLAAVSKLHGEGYKSLGWLTGGFNRVSEGDFPEI 181