Miyakogusa Predicted Gene

Lj1g3v1019020.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1019020.1 tr|A9TWI7|A9TWI7_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_172369,29.3,0.0000000000001,SUBFAMILY NOT NAMED,NULL;
FAMILY NOT NAMED,NULL,NODE_28861_length_1541_cov_106.963661.path2.1
         (201 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24350.2 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   179   1e-45
AT5G24350.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Secretory ...   179   1e-45

>AT5G24350.2 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
            INVOLVED IN: biological_process unknown; LOCATED IN:
            cellular_component unknown; EXPRESSED IN: 23 plant
            structures; EXPRESSED DURING: 13 growth stages; CONTAINS
            InterPro DOMAIN/s: Secretory pathway Sec39
            (InterPro:IPR013244). | chr5:8301537-8310746 FORWARD
            LENGTH=2396
          Length = 2396

 Score =  179 bits (454), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 98/202 (48%), Positives = 141/202 (69%), Gaps = 6/202 (2%)

Query: 2    DCFLALKMTLLLPYKTLQLECLSAVEDNIRQ-GIPEARSKDF-ELLVLILTSGILTSIMT 59
            D FLALK++LLLPYK ++ +CLS VE+ ++Q GIPE  S+   E+L+L++ SG L++I++
Sbjct: 2189 DPFLALKISLLLPYKQIRSQCLSVVEEQLKQEGIPELSSQSHHEVLLLVIYSGTLSTIIS 2248

Query: 60   DSSYGTTFSYLCYLVGNLSNQCQQALV--PGRGFANSEDQENELLLFRRILFPYFISELV 117
            ++ YG+ FS+LCYL+G LS + Q+  +       +N+  +   +  F +++FP F+S LV
Sbjct: 2249 NACYGSVFSFLCYLIGKLSREFQEERITQADNRESNASSESRFISCFGQLMFPCFVSGLV 2308

Query: 118  KADQHVLAGFLVTKFMHTNESLSLINIAGASLNRYLEKQLHMLQG--NEFHVEKTCKTLK 175
            KADQ +LAGFLVTKFMH+N SLSLIN+A ASL RYL+KQL  L+   + F      +TLK
Sbjct: 2309 KADQQILAGFLVTKFMHSNPSLSLINVAEASLRRYLDKQLESLEHLEDSFAESSDFETLK 2368

Query: 176  NTISRLRGKLSNLIQSTLPLLS 197
            NT+S LRG    +I+S L  LS
Sbjct: 2369 NTVSSLRGTSKEVIRSALASLS 2390


>AT5G24350.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Secretory
            pathway Sec39 (InterPro:IPR013244); Has 1807 Blast hits
            to 1807 proteins in 277 species: Archae - 0; Bacteria -
            0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
            Other Eukaryotes - 339 (source: NCBI BLink). |
            chr5:8301537-8310746 FORWARD LENGTH=2376
          Length = 2376

 Score =  179 bits (454), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 98/202 (48%), Positives = 141/202 (69%), Gaps = 6/202 (2%)

Query: 2    DCFLALKMTLLLPYKTLQLECLSAVEDNIRQ-GIPEARSKDF-ELLVLILTSGILTSIMT 59
            D FLALK++LLLPYK ++ +CLS VE+ ++Q GIPE  S+   E+L+L++ SG L++I++
Sbjct: 2169 DPFLALKISLLLPYKQIRSQCLSVVEEQLKQEGIPELSSQSHHEVLLLVIYSGTLSTIIS 2228

Query: 60   DSSYGTTFSYLCYLVGNLSNQCQQALV--PGRGFANSEDQENELLLFRRILFPYFISELV 117
            ++ YG+ FS+LCYL+G LS + Q+  +       +N+  +   +  F +++FP F+S LV
Sbjct: 2229 NACYGSVFSFLCYLIGKLSREFQEERITQADNRESNASSESRFISCFGQLMFPCFVSGLV 2288

Query: 118  KADQHVLAGFLVTKFMHTNESLSLINIAGASLNRYLEKQLHMLQG--NEFHVEKTCKTLK 175
            KADQ +LAGFLVTKFMH+N SLSLIN+A ASL RYL+KQL  L+   + F      +TLK
Sbjct: 2289 KADQQILAGFLVTKFMHSNPSLSLINVAEASLRRYLDKQLESLEHLEDSFAESSDFETLK 2348

Query: 176  NTISRLRGKLSNLIQSTLPLLS 197
            NT+S LRG    +I+S L  LS
Sbjct: 2349 NTVSSLRGTSKEVIRSALASLS 2370