Miyakogusa Predicted Gene

Lj1g3v1008920.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1008920.1 Non Chatacterized Hit- tr|I3SF98|I3SF98_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,96.69,0,MCT-1
PROTEIN,Translation-associated RNA-binding, predicted; seg,NULL; PUA
domain-like,PUA-like doma,CUFF.26672.1
         (181 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G09150.1 | Symbols:  | pseudouridine synthase and archaeosine...   307   2e-84
AT1G71350.1 | Symbols:  | eukaryotic translation initiation fact...    64   8e-11

>AT1G09150.1 | Symbols:  | pseudouridine synthase and archaeosine
           transglycosylase (PUA) domain-containing protein |
           chr1:2946599-2948908 FORWARD LENGTH=181
          Length = 181

 Score =  307 bits (787), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 146/181 (80%), Positives = 160/181 (88%)

Query: 1   MFKKFSGEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDILPKKSPLIVAKCQNHXXX 60
           MFKKF  EE+S+QNQVKASVQRRIRQSI +EYPGLE V++D+LPKK PLIV KC NH   
Sbjct: 1   MFKKFCLEEISSQNQVKASVQRRIRQSIQDEYPGLESVMEDLLPKKIPLIVVKCPNHLTL 60

Query: 61  XXXXXXPLFFSIRDGPYMPTLRLLHQYPDIMKKLQVDRGAIRFVLAGANIMCPGLTSPGG 120
                 PLFF IRDGPYMPTLRLLHQYP+IMK+ QVDRGAI+FVL+GANIMCPGLTSPGG
Sbjct: 61  VVVNNVPLFFCIRDGPYMPTLRLLHQYPNIMKRFQVDRGAIKFVLSGANIMCPGLTSPGG 120

Query: 121 VLDEEVGAECPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNLHYLNDGLWKMEQL 180
           VLD+EV AE PVAI AEGKQHALAIGFTKMSAKDIK+INKGIGVDN+HYLNDGLWKME+L
Sbjct: 121 VLDQEVEAERPVAIYAEGKQHALAIGFTKMSAKDIKSINKGIGVDNMHYLNDGLWKMERL 180

Query: 181 D 181
           D
Sbjct: 181 D 181


>AT1G71350.1 | Symbols:  | eukaryotic translation initiation factor
           SUI1 family protein | chr1:26888525-26891209 REVERSE
           LENGTH=597
          Length = 597

 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 90/183 (49%), Gaps = 11/183 (6%)

Query: 1   MFKKFSGEEVSAQNQVKASVQRRIRQSIAEEYPGL-EPVLDDILPKKSPLIVAKCQNHXX 59
           MFKK    E  +  ++  + ++++R+++    P L + +LD ILP K  + ++K QN   
Sbjct: 1   MFKK--AVEAKSHQRLSGADRKKLRRTVRNRLPLLTDELLDAILPPKVEITLSKFQNRVI 58

Query: 60  XXXXXXX-PLFFSI--RDGPYMPTLRLLHQYPDIMKKLQVDRGAI-RFVLAGANIMCPG- 114
                   P+FF I  R     PT+  L + P+++    +  G + R+++ GA++M PG 
Sbjct: 59  VYSIEGGCPMFFDIDGRGTEIFPTVFALWEAPEMLPSFMLKGGEVSRYIIGGADLMFPGI 118

Query: 115 LTSPGGVLDEEVGAECPVAIMAEGKQHALAIGFTKMSAKDI-KAINKGIGVDNLHYLNDG 173
           L  P G      G     A+   G    +A+G T MS+++  KA  +G  +   HY  D 
Sbjct: 119 LIPPQGYPSFSAGEIW--AVKVPGNLAPIAVGCTTMSSEEARKAGLRGKALRITHYYRDF 176

Query: 174 LWK 176
           LW+
Sbjct: 177 LWE 179