Miyakogusa Predicted Gene

Lj1g3v1008810.2
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1008810.2 Non Chatacterized Hit- tr|I1NH08|I1NH08_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.13293
PE,67.19,0.00000000000001,RRM_1,RNA recognition motif domain; no
description,Nucleotide-binding, alpha-beta plait; seg,NULL;
R,CUFF.26661.2
         (232 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21320.2 | Symbols:  | nucleotide binding;nucleic acid bindin...   164   4e-41
AT1G76940.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   160   8e-40
AT1G21320.1 | Symbols:  | nucleotide binding;nucleic acid bindin...   150   5e-37
AT1G76940.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   135   2e-32
AT3G13700.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    47   9e-06

>AT1G21320.2 | Symbols:  | nucleotide binding;nucleic acid binding |
           chr1:7462834-7466164 REVERSE LENGTH=253
          Length = 253

 Score =  164 bits (415), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 101/238 (42%), Positives = 135/238 (56%), Gaps = 24/238 (10%)

Query: 1   MSDAYW----RYAAESRHNPSAIAAKRARSDYD----VSGVHDMPGYYPHDDDRGGLRVI 52
           M+D YW    +Y      NP  +  KR RSD+     +    DM  Y   D+DRG    +
Sbjct: 1   MADEYWNQQRQYQLPISSNPHVLPPKRPRSDFQGTPYLIPSGDMHSYLSQDEDRGIPHSV 60

Query: 53  RDTESLDASYERYLRSAQVSSF---------GEGQSTRTIRGRLPSHSFDDSHVTSIGGV 103
           +DT S+ ++Y+RYL+S Q             G G   +     +P  S  +      G +
Sbjct: 61  KDTRSIGSAYDRYLQSMQTFFVPSEEAGPFNGVGMVRQGGSNMMPGPSMGELMAGCGGSL 120

Query: 104 --DRGPSAKEKILGL--SSGRPD---HSLPPDATSTLFVEGLPTNCSRREVAHIFRPFVG 156
             D  P+ ++   G   S GRP    H LPPD ++TL+VEGLP+NCSRREV+HIFRPFVG
Sbjct: 121 PSDFRPNGRDMGFGQLDSVGRPGREPHPLPPDVSNTLYVEGLPSNCSRREVSHIFRPFVG 180

Query: 157 YKEVRLVSKESRQPGGDPLVLCFVDFESPAHAATAKDALQGYKFDELDRNSANLRFQF 214
           Y+EVRLV+++S+   GDP VLCFVDFE+ A AATA  ALQ Y+ DE + +S  LR QF
Sbjct: 181 YREVRLVTQDSKHRSGDPTVLCFVDFENSACAATALSALQDYRMDEDEPDSKILRLQF 238


>AT1G76940.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:28902707-28904085 REVERSE LENGTH=233
          Length = 233

 Score =  160 bits (404), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 101/228 (44%), Positives = 136/228 (59%), Gaps = 21/228 (9%)

Query: 1   MSDAYWRYAAESRHNPSAIAAKRARSDYDVSG----VHDMPGYYPHDDDRGGLRVIRDTE 56
           M+D YW    + +H+P     KR RSD++       +    GYYP D+D      + DT 
Sbjct: 1   MADGYWNQQRQ-QHHPPGGPMKRPRSDFEAPSSTMTIGHGGGYYPRDEDLD----VPDTR 55

Query: 57  SLDASYERYLRSAQVSSFGEGQSTRTIRGRLPS----HSFDDSHVTSIGGV---DRGPSA 109
           ++ ++Y+RYL+S Q    G     R+  G         + DD  +   GGV   D GP+ 
Sbjct: 56  TIGSAYDRYLQSVQSGEGGSVSMGRSGGGGGGGGGNVQTIDD-FMLRRGGVLPLDHGPNG 114

Query: 110 KEKILGLSSGRP--DHSLPPDATSTLFVEGLPTNCSRREVAHIFRPFVGYKEVRLVSKES 167
               +G     P    +LP DA++TL+VEGLP+NCSRREVAHIFRPFVGY+EVRLV+K+S
Sbjct: 115 H--TIGFDPPEPVGRRNLPSDASNTLYVEGLPSNCSRREVAHIFRPFVGYREVRLVTKDS 172

Query: 168 RQPGGDPLVLCFVDFESPAHAATAKDALQGYKFDELDRNSANLRFQFA 215
           +   GDP+VLCFVDF +PA AATA  ALQGY+ DE + +S  LR QF+
Sbjct: 173 KHRNGDPIVLCFVDFTNPACAATALSALQGYRMDENESDSKFLRLQFS 220


>AT1G21320.1 | Symbols:  | nucleotide binding;nucleic acid binding |
           chr1:7462834-7465200 REVERSE LENGTH=421
          Length = 421

 Score =  150 bits (380), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 90/196 (45%), Positives = 119/196 (60%), Gaps = 16/196 (8%)

Query: 35  DMPGYYPHDDDRGGLRVIRDTESLDASYERYLRSAQV--------SSF-GEGQSTRTIRG 85
           DM  Y   D+DRG    ++DT S+ ++Y+RYL+S Q           F G G   +    
Sbjct: 211 DMHSYLSQDEDRGIPHSVKDTRSIGSAYDRYLQSMQTFFVPSEEAGPFNGVGMVRQGGSN 270

Query: 86  RLPSHSFDDSHVTSIGGV--DRGPSAKEKILGL--SSGRPD---HSLPPDATSTLFVEGL 138
            +P  S  +      G +  D  P+ ++   G   S GRP    H LPPD ++TL+VEGL
Sbjct: 271 MMPGPSMGELMAGCGGSLPSDFRPNGRDMGFGQLDSVGRPGREPHPLPPDVSNTLYVEGL 330

Query: 139 PTNCSRREVAHIFRPFVGYKEVRLVSKESRQPGGDPLVLCFVDFESPAHAATAKDALQGY 198
           P+NCSRREV+HIFRPFVGY+EVRLV+++S+   GDP VLCFVDFE+ A AATA  ALQ Y
Sbjct: 331 PSNCSRREVSHIFRPFVGYREVRLVTQDSKHRSGDPTVLCFVDFENSACAATALSALQDY 390

Query: 199 KFDELDRNSANLRFQF 214
           + DE + +S  LR QF
Sbjct: 391 RMDEDEPDSKILRLQF 406


>AT1G76940.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:28902707-28904085 REVERSE LENGTH=179
          Length = 179

 Score =  135 bits (341), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 72/127 (56%), Positives = 90/127 (70%), Gaps = 7/127 (5%)

Query: 94  DSHVTSIGGV---DRGPSAKEKILGLSSGRP--DHSLPPDATSTLFVEGLPTNCSRREVA 148
           D  +   GGV   D GP+     +G     P    +LP DA++TL+VEGLP+NCSRREVA
Sbjct: 42  DDFMLRRGGVLPLDHGPNGH--TIGFDPPEPVGRRNLPSDASNTLYVEGLPSNCSRREVA 99

Query: 149 HIFRPFVGYKEVRLVSKESRQPGGDPLVLCFVDFESPAHAATAKDALQGYKFDELDRNSA 208
           HIFRPFVGY+EVRLV+K+S+   GDP+VLCFVDF +PA AATA  ALQGY+ DE + +S 
Sbjct: 100 HIFRPFVGYREVRLVTKDSKHRNGDPIVLCFVDFTNPACAATALSALQGYRMDENESDSK 159

Query: 209 NLRFQFA 215
            LR QF+
Sbjct: 160 FLRLQFS 166


>AT3G13700.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr3:4490859-4492632 REVERSE LENGTH=287
          Length = 287

 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 7/89 (7%)

Query: 127 PDATSTLFVEGLPTNCSRREVAHIFRPFVGYKEVRLVSKESRQPGGDPLVLCFVDFESPA 186
           P A +TLFV GLP +   RE+ ++FR   G++  +L     +  G    V+ F  F S  
Sbjct: 33  PGAINTLFVSGLPNDVKAREIHNLFRRRHGFESCQL-----KYTGRGDQVVAFATFTSHR 87

Query: 187 HAATAKDALQGYKFDELDRNSANLRFQFA 215
            A  A + L G KFD   +  +NL  + A
Sbjct: 88  FALAAMNELNGVKFDP--QTGSNLHIELA 114