Miyakogusa Predicted Gene
- Lj1g3v0986640.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v0986640.1 Non Chatacterized Hit- tr|Q9LXF5|Q9LXF5_ARATH
Putative uncharacterized protein F8M21_160 OS=Arabidop,34.29,2e-18,no
description,NULL; K homology RNA-binding domain,K Homology domain;
KH_TYPE_1,K Homology domain, t,CUFF.26634.1
(542 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G53060.1 | Symbols: | RNA-binding KH domain-containing prote... 557 e-159
AT5G15270.1 | Symbols: | RNA-binding KH domain-containing prote... 160 1e-39
AT5G15270.2 | Symbols: | RNA-binding KH domain-containing prote... 160 1e-39
AT4G18375.2 | Symbols: | RNA-binding KH domain-containing prote... 144 2e-34
AT1G51580.1 | Symbols: | RNA-binding KH domain-containing prote... 141 1e-33
AT5G46190.1 | Symbols: | RNA-binding KH domain-containing prote... 129 4e-30
AT5G64390.1 | Symbols: HEN4 | RNA-binding KH domain-containing p... 129 7e-30
AT5G64390.3 | Symbols: HEN4 | RNA-binding KH domain-containing p... 129 7e-30
AT5G64390.2 | Symbols: HEN4 | RNA-binding KH domain-containing p... 129 7e-30
AT2G22600.1 | Symbols: | RNA-binding KH domain-containing prote... 110 3e-24
AT1G14170.1 | Symbols: | RNA-binding KH domain-containing prote... 107 2e-23
AT1G14170.3 | Symbols: | RNA-binding KH domain-containing prote... 107 3e-23
AT1G14170.2 | Symbols: | RNA-binding KH domain-containing prote... 107 3e-23
AT4G18375.1 | Symbols: | RNA-binding KH domain-containing prote... 105 5e-23
AT3G04610.1 | Symbols: FLK | RNA-binding KH domain-containing pr... 96 8e-20
AT4G26000.1 | Symbols: PEP | RNA-binding KH domain-containing pr... 89 7e-18
AT5G09560.1 | Symbols: | RNA-binding KH domain-containing prote... 84 2e-16
AT5G53060.2 | Symbols: | RNA-binding KH domain-containing prote... 71 2e-12
AT2G03110.1 | Symbols: | RNA binding;nucleic acid binding | chr... 52 2e-06
>AT5G53060.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:21515355-21518197 FORWARD LENGTH=652
Length = 652
Score = 557 bits (1436), Expect = e-159, Method: Compositional matrix adjust.
Identities = 313/559 (55%), Positives = 387/559 (69%), Gaps = 30/559 (5%)
Query: 1 MPGDEERIIEISDTRRQDPDRRMPSFSPAQEALLMIHERILXXXXXXXXXXXX-XXXXXX 59
+PGD ERIIEISD RR+DPD RMPSFSPAQEAL +H+RIL
Sbjct: 107 VPGDAERIIEISDNRRRDPDGRMPSFSPAQEALFSVHDRILESEAQFGYGGPPPEEEEDY 166
Query: 60 XXXXXXXXXXXXXXXXXXMHVGCLMGKGGKIIEQMRMETKTQIRILPRDHNLPRCVSMSE 119
MHVGCL+GKGGKIIEQMR+ETKT IRILPR+ NLPRCVS+SE
Sbjct: 167 GGVRPGGGRVVTRLVVSRMHVGCLLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSLSE 226
Query: 120 EIVQVTGDVNAVKNALEVISSRLRESQXXXXXXXXXXXXSPER-FFSPDDDYIP--RRSS 176
EIVQ+ G++NAVKNAL ++SSRLRESQ SPER F + DDY+P RR S
Sbjct: 227 EIVQIVGELNAVKNALAIVSSRLRESQHRDRSNFQGRSHSPERSFAAAGDDYMPQLRRQS 286
Query: 177 MDRPGFGSRIATTNTRNNSHSSL--GYAMEQGAPPVADDAQPLYGEDIVFRILCPVEKVD 234
DR G N RNN+ SS YA E A PV ++ +Y E++VF+ILCP +K+
Sbjct: 287 SDRFPRG------NFRNNNFSSRQSNYAEEAPAVPVGEN---VYSEELVFQILCPADKIV 337
Query: 235 RIIGESDGIVEFLQNEVGVDVRVINPVGGSNEQIVIVTSEEGPDDVLFPAQEALLHIQTR 294
R++GES GI++ LQNE+GVDVRV +PV GS+EQI+ ++SEE PDD FPAQEALLHIQT+
Sbjct: 338 RVVGESQGIIDLLQNEIGVDVRVSDPVAGSDEQIITISSEEAPDDPFFPAQEALLHIQTQ 397
Query: 295 IVDLVLDKDNFITTRLVVPSSYIECLDGKDASLSEIRRLTGANIQILPREELPSCVAKTD 354
I+DL+ DKDN ITTRL+VPS CL+GK S+SEI RLTG ++QIL REE+P C + D
Sbjct: 398 IIDLIPDKDNLITTRLLVPSRDSICLEGKAGSVSEISRLTGTSVQILAREEIPRCASIND 457
Query: 355 ELVQIVGEIKAARDAVVEVTSRLRSYLYRDFFQRDIVPPSASLPG--------FEASSSN 406
++QI GEI+AAR+A+VE+T LRS+++++ Q++ P S S G E +SSN
Sbjct: 458 VVIQITGEIRAAREALVELTLLLRSHMFKELSQKETPPASTSTTGPLEGVAGVMEVASSN 517
Query: 407 NI--SLVAETSSIYQNVQSMAAALPS-KESGGSSFEAGKQKESDRGDDVLGSLNRLAVPL 463
N S TSS N+Q ++ LP KE GS +AG ES+ ++V + +R+AVPL
Sbjct: 518 NTIQSREGPTSSNL-NLQQVSTILPQFKEGFGSVAKAG---ESEHREEVPVTTSRMAVPL 573
Query: 464 VTRSTLEVVIPEYAVPKLTAKSRSKLAQISELSGANVTLVEDRPDVTQKIIQISGTPEQA 523
VTRSTLEVV+PE VPKL KSR+KLAQISE SGA+VT+VEDRP+ TQ II+ISGTPEQA
Sbjct: 574 VTRSTLEVVLPEAVVPKLVTKSRNKLAQISEWSGASVTIVEDRPEETQNIIRISGTPEQA 633
Query: 524 ERAQSLLQGFILSTQEDGP 542
ERAQSLLQGFILS QEDGP
Sbjct: 634 ERAQSLLQGFILSIQEDGP 652
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 100/188 (53%), Gaps = 26/188 (13%)
Query: 223 VFRILCPVEKVDRIIGESDGIVEFLQNEVGVDVRVINPVGGSNEQIVIVTSE-----EGP 277
+RILC K +IG+S I++ ++ G + V V G E+I+ ++ +G
Sbjct: 69 TYRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAERIIEISDNRRRDPDGR 128
Query: 278 DDVLFPAQEALLHIQTRIVDLVL----------DKDNF---------ITTRLVVPSSYIE 318
PAQEAL + RI++ +++++ + TRLVV ++
Sbjct: 129 MPSFSPAQEALFSVHDRILESEAQFGYGGPPPEEEEDYGGVRPGGGRVVTRLVVSRMHVG 188
Query: 319 CLDGKDASLSEIRRL-TGANIQILPRE-ELPSCVAKTDELVQIVGEIKAARDAVVEVTSR 376
CL GK + E R+ T +I+ILPRE LP CV+ ++E+VQIVGE+ A ++A+ V+SR
Sbjct: 189 CLLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSLSEEIVQIVGELNAVKNALAIVSSR 248
Query: 377 LRSYLYRD 384
LR +RD
Sbjct: 249 LRESQHRD 256
>AT5G15270.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:4958738-4960947 FORWARD LENGTH=548
Length = 548
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 119/400 (29%), Positives = 196/400 (49%), Gaps = 59/400 (14%)
Query: 1 MPGDEERIIEISDTRRQDPDRRMPSF-------SPAQEALLMIHERILXXXXXXXXXXXX 53
+PG +ER+I I P +F SPAQ+AL IH+R++
Sbjct: 89 IPGCDERVITI-----YSPSDETNAFGDGEKVLSPAQDALFRIHDRVVADDARSEDSPEG 143
Query: 54 XXXXXXXXXXXXXXXXXXXXXXXXMHVGCLMGKGGKIIEQMRMETKTQIRILPRDHNLPR 113
+GC++G+GG+I++ +R ET QIRI+ +D N+P
Sbjct: 144 EKQVTAKLLVPSD------------QIGCILGRGGQIVQNIRSETGAQIRIV-KDRNMPL 190
Query: 114 CVSMSEEIVQVTGDVNAVKNALEVISSRLRESQXXXXXXXXXXXXSPERFFSPDDDYIPR 173
C S+E++Q++G+V VK AL I+SRL E+ + S Y P
Sbjct: 191 CALNSDELIQISGEVLIVKKALLQIASRLHENPSRS-----------QNLLSSSGGY-PA 238
Query: 174 RSSMDRPGFGSRIATTNTRNNSHSSLGYAMEQGAPPVADDAQPLY--------GEDIVFR 225
S M G G R+ S Y + G D ++PLY + R
Sbjct: 239 GSLMSHAG-GPRLVGLAPLMGS-----YGRDAG-----DWSRPLYQPPRNDPPATEFFIR 287
Query: 226 ILCPVEKVDRIIGESDGIVEFLQNEVGVDVRVINPVGGSNEQIVIVTSEEGPDDVLFPAQ 285
++ PVE + +IG+ ++ L+ E ++V + N+ ++ +++ E +D P
Sbjct: 288 LVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITISAREVFEDAYSPTI 347
Query: 286 EALLHIQTRIVDLVLDKDNFI--TTRLVVPSSYIECLDGKDASL-SEIRRLTGANIQILP 342
EA++ +Q + D V + TTRL+VPSS I C+ GK ++ +E+RR+T ANI+IL
Sbjct: 348 EAVMRLQPKCSDKVERDSGLVSFTTRLLVPSSRIGCILGKGGAIITEMRRMTKANIRILG 407
Query: 343 REELPSCVAKTDELVQIVGEIKAARDAVVEVTSRLRSYLY 382
+E LP + DE+VQI GE+ A++A++++TSRLR+ ++
Sbjct: 408 KENLPKVASDDDEMVQISGELDVAKEALIQITSRLRANVF 447
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 98/175 (56%), Gaps = 20/175 (11%)
Query: 220 EDIVFRILCPVEKVDRIIGESDGIVEFLQNEVGVDVRVINPVGGSNEQIVIVTSEEGPDD 279
+D VFR LCPV+K+ +IG IV+ L+N+ +R+ + G +E+++ + S P D
Sbjct: 48 DDTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYS---PSD 104
Query: 280 ----------VLFPAQEALLHIQTRIV-DLVLDKDN-----FITTRLVVPSSYIECLDGK 323
VL PAQ+AL I R+V D +D+ +T +L+VPS I C+ G+
Sbjct: 105 ETNAFGDGEKVLSPAQDALFRIHDRVVADDARSEDSPEGEKQVTAKLLVPSDQIGCILGR 164
Query: 324 DASLSE-IRRLTGANIQILPREELPSCVAKTDELVQIVGEIKAARDAVVEVTSRL 377
+ + IR TGA I+I+ +P C +DEL+QI GE+ + A++++ SRL
Sbjct: 165 GGQIVQNIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRL 219
>AT5G15270.2 | Symbols: | RNA-binding KH domain-containing protein
| chr5:4958738-4960947 FORWARD LENGTH=548
Length = 548
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 119/400 (29%), Positives = 196/400 (49%), Gaps = 59/400 (14%)
Query: 1 MPGDEERIIEISDTRRQDPDRRMPSF-------SPAQEALLMIHERILXXXXXXXXXXXX 53
+PG +ER+I I P +F SPAQ+AL IH+R++
Sbjct: 89 IPGCDERVITI-----YSPSDETNAFGDGEKVLSPAQDALFRIHDRVVADDARSEDSPEG 143
Query: 54 XXXXXXXXXXXXXXXXXXXXXXXXMHVGCLMGKGGKIIEQMRMETKTQIRILPRDHNLPR 113
+GC++G+GG+I++ +R ET QIRI+ +D N+P
Sbjct: 144 EKQVTAKLLVPSD------------QIGCILGRGGQIVQNIRSETGAQIRIV-KDRNMPL 190
Query: 114 CVSMSEEIVQVTGDVNAVKNALEVISSRLRESQXXXXXXXXXXXXSPERFFSPDDDYIPR 173
C S+E++Q++G+V VK AL I+SRL E+ + S Y P
Sbjct: 191 CALNSDELIQISGEVLIVKKALLQIASRLHENPSRS-----------QNLLSSSGGY-PA 238
Query: 174 RSSMDRPGFGSRIATTNTRNNSHSSLGYAMEQGAPPVADDAQPLY--------GEDIVFR 225
S M G G R+ S Y + G D ++PLY + R
Sbjct: 239 GSLMSHAG-GPRLVGLAPLMGS-----YGRDAG-----DWSRPLYQPPRNDPPATEFFIR 287
Query: 226 ILCPVEKVDRIIGESDGIVEFLQNEVGVDVRVINPVGGSNEQIVIVTSEEGPDDVLFPAQ 285
++ PVE + +IG+ ++ L+ E ++V + N+ ++ +++ E +D P
Sbjct: 288 LVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITISAREVFEDAYSPTI 347
Query: 286 EALLHIQTRIVDLVLDKDNFI--TTRLVVPSSYIECLDGKDASL-SEIRRLTGANIQILP 342
EA++ +Q + D V + TTRL+VPSS I C+ GK ++ +E+RR+T ANI+IL
Sbjct: 348 EAVMRLQPKCSDKVERDSGLVSFTTRLLVPSSRIGCILGKGGAIITEMRRMTKANIRILG 407
Query: 343 REELPSCVAKTDELVQIVGEIKAARDAVVEVTSRLRSYLY 382
+E LP + DE+VQI GE+ A++A++++TSRLR+ ++
Sbjct: 408 KENLPKVASDDDEMVQISGELDVAKEALIQITSRLRANVF 447
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 98/175 (56%), Gaps = 20/175 (11%)
Query: 220 EDIVFRILCPVEKVDRIIGESDGIVEFLQNEVGVDVRVINPVGGSNEQIVIVTSEEGPDD 279
+D VFR LCPV+K+ +IG IV+ L+N+ +R+ + G +E+++ + S P D
Sbjct: 48 DDTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYS---PSD 104
Query: 280 ----------VLFPAQEALLHIQTRIV-DLVLDKDN-----FITTRLVVPSSYIECLDGK 323
VL PAQ+AL I R+V D +D+ +T +L+VPS I C+ G+
Sbjct: 105 ETNAFGDGEKVLSPAQDALFRIHDRVVADDARSEDSPEGEKQVTAKLLVPSDQIGCILGR 164
Query: 324 DASLSE-IRRLTGANIQILPREELPSCVAKTDELVQIVGEIKAARDAVVEVTSRL 377
+ + IR TGA I+I+ +P C +DEL+QI GE+ + A++++ SRL
Sbjct: 165 GGQIVQNIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRL 219
>AT4G18375.2 | Symbols: | RNA-binding KH domain-containing protein
| chr4:10152825-10155125 FORWARD LENGTH=606
Length = 606
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 136/493 (27%), Positives = 243/493 (49%), Gaps = 77/493 (15%)
Query: 83 LMGKGGKIIEQMRMETKTQIRILPRDHNLPR--CVSMSEEIVQVTGDVNAVKNALEVISS 140
L+GK G+ I+++R T+ ++++ +D + P C + +V ++G+ +VK AL +S+
Sbjct: 153 LIGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSA 212
Query: 141 RL-----RESQXXXXXXXXXXXXS------------PERFFSPDDDYIPRRSSMDRPGFG 183
+ RE+ S P+ F + D+I ++ + P +
Sbjct: 213 IMYKINPRENIPLDSTSQDVPAASVIVPSDLSNSVYPQTGFYSNQDHILQQGA-GVPSYF 271
Query: 184 SRIATTNTRNNSHSSLGYAMEQGAP-PVADDAQPL---YG-----EDIVFRILCPVEKVD 234
+ ++ ++ + GYA P PV + P+ +G E++VF++LCP+ +
Sbjct: 272 NALSVSDFQ-------GYAETAANPVPVFASSLPVTHGFGGSSRSEELVFKVLCPLCNIM 324
Query: 235 RIIGESDGIVEFLQNEVG--VDVRVINPVGGSNEQIVIVTSEEGPDDVLFPAQEALLHIQ 292
R+IG+ ++ ++ G ++V G +E ++IVT+ E PDD+ A EA+L +Q
Sbjct: 325 RVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTATESPDDMKSMAVEAVLLLQ 384
Query: 293 TRIVDLVLDKDNFITTRLVVPSSYIECLDGKDAS-LSEIRRLTGANIQILPREELPSCVA 351
I D D +N + +L+V S I C+ GK S ++EIR+ T ANI I
Sbjct: 385 EYINDE--DAEN-VKMQLLVSSKVIGCVIGKSGSVINEIRKRTNANICISK--------G 433
Query: 352 KTDELVQIVGEIKAARDAVVEVTSRLRSYLYRDFFQRDIV----PPSASLPGFEASSSNN 407
K D+LV++ GE+ + RDA++++ RLR + D +D V PP+ ++N
Sbjct: 434 KKDDLVEVSGEVSSVRDALIQIVLRLREDVLGD---KDSVATRKPPA---------RTDN 481
Query: 408 ISLVAETSSIYQNVQSMAAALPSKES--GGSSFEAGKQKESDRGDDVLGSLNRLAVP-LV 464
S ++ +S+ + S +++ S G SF AG D+VLGS + L
Sbjct: 482 CSFLSGSSNAGYTLPSFMSSMASTSGFHGYGSFPAG--------DNVLGSTGPYSYGRLP 533
Query: 465 TRSTLEVVIPEYAVPKLTAKSRSKLAQISELSGANVTLVEDRPDVTQKIIQISGTPEQAE 524
+ S LE++IP +A+ K+ K L I +SGA + + + I +SGT EQ
Sbjct: 534 SSSALEILIPAHAMSKVMGKGGGNLENIRRISGAMIEISASKTSHGDHIALLSGTLEQMR 593
Query: 525 RAQSLLQGFILST 537
A++L+Q F++ST
Sbjct: 594 CAENLVQAFVMST 606
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 96/179 (53%), Gaps = 23/179 (12%)
Query: 220 EDIVFRILCPVEKVDRIIGESDGIVEFLQNEVGVDVRVINPVGGSNEQIVIV--TSEEGP 277
E +V+RILCP++ V +IG+S ++ +++ ++V + + G +++++ + + +E
Sbjct: 34 ELVVYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYCSVKEKQ 93
Query: 278 DDVLFP---------AQEALLHIQTRIV--------DLVLDKDNFITTRLVVPSSYIECL 320
+++ F AQ+ALL + IV +D+D+ RL+VP S L
Sbjct: 94 EEIGFTKSENEPLCCAQDALLKVYDAIVASDEENNTKTNVDRDDNKECRLLVPFSQSSSL 153
Query: 321 DGKDA-SLSEIRRLTGANIQILPRE-ELPS--CVAKTDELVQIVGEIKAARDAVVEVTS 375
GK ++ IRR T A+++++ ++ PS C + D +V I GE ++ + A+ V++
Sbjct: 154 IGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSA 212
>AT1G51580.1 | Symbols: | RNA-binding KH domain-containing protein
| chr1:19125612-19128102 FORWARD LENGTH=621
Length = 621
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 160/308 (51%), Gaps = 40/308 (12%)
Query: 83 LMGKGGKIIEQMRMETKTQIRILPRDHNLPRCVSMSEEIVQVTGDVNAVKNALEVISSRL 142
LM KGGK+I+++R ++ +RI D +P C + ++Q+ G ++VK AL ++++ L
Sbjct: 162 LMSKGGKMIQKIREDSGAIVRISSTD-QIPPCAFPGDVVIQMNGKFSSVKKALLLVTNCL 220
Query: 143 RESQXXXXXXXXXXXXSPERFFSPDDDYIPRRSSMDRPGFGSRIATTNTRNNSHSSLGYA 202
+ES P D P +PG+ + S+ Y
Sbjct: 221 QESGA-----------------PPTWDECP----FPQPGYPPE----------YHSMEYH 249
Query: 203 MEQGAPP-------VADDAQPLYGEDIVFRILCPVEKVDRIIGESDGIVEFLQNEVGVDV 255
+ PP V +P+ E++ FR+LCP +KV +IG+ +V LQNE G +
Sbjct: 250 PQWDHPPPNPMPEDVGPFNRPVVEEEVAFRLLCPADKVGSLIGKGGAVVRALQNESGASI 309
Query: 256 RVINPVGGSNEQIVIVTSEEGPDDVLFPAQEALLHIQTRIVDLVLDKDNFITTRLVVPSS 315
+V +P S E+I+++++ E + AQ+ ++ + RIV++ + + RL+V S
Sbjct: 310 KVSDPTHDSEERIIVISARENLERRHSLAQDGVMRVHNRIVEIGFEPSAAVVARLLVHSP 369
Query: 316 YIECLDGKDASL-SEIRRLTGANIQILPREELPSCVAKTDELVQIVGEIKAARDAVVEVT 374
YI L GK L SE+RR TGA+I++ +++ ++ DE+VQ++G +K +DA+ ++
Sbjct: 370 YIGRLLGKGGHLISEMRRATGASIRVFAKDQATKYESQHDEIVQVIGNLKTVQDALFQIL 429
Query: 375 SRLRSYLY 382
RLR ++
Sbjct: 430 CRLREAMF 437
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 55/89 (61%), Gaps = 4/89 (4%)
Query: 450 DDVLGSLNRLAVPLVTRSTLEVVIPEYAVPKLTAKSRSKLAQISELSGANVTLVEDRPDV 509
++ +GS N P++T + +E+VIP+ + + ++ S L I ++SGANV + + +
Sbjct: 536 NEPIGSEN----PVMTSANVEIVIPQAYLGHVYGENCSNLNYIKQVSGANVVVHDPKAGT 591
Query: 510 TQKIIQISGTPEQAERAQSLLQGFILSTQ 538
T+ ++ +SGT +QA AQSLL FIL Q
Sbjct: 592 TEGLVVVSGTSDQAHFAQSLLHAFILCGQ 620
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 80/325 (24%), Positives = 125/325 (38%), Gaps = 69/325 (21%)
Query: 5 EERIIEISDTRRQDPDRRMPSFSPAQEALLMIHERILXXXXXXXXXXXXXXXXXXXXXXX 64
EERII IS R++ +RR S AQ+ ++ +H RI+
Sbjct: 319 EERIIVIS--ARENLERR---HSLAQDGVMRVHNRIVEIGFEPSAAVVARLLVHSP---- 369
Query: 65 XXXXXXXXXXXXXMHVGCLMGKGGKIIEQMRMETKTQIRILPRDHNLPRCVSMSEEIVQV 124
++G L+GKGG +I +MR T IR+ +D + S +EIVQV
Sbjct: 370 --------------YIGRLLGKGGHLISEMRRATGASIRVFAKDQAT-KYESQHDEIVQV 414
Query: 125 TGDVNAVKNALEVISSRLRESQ-----------------------XXXXXXXXXXXXSPE 161
G++ V++AL I RLRE+ SP+
Sbjct: 415 IGNLKTVQDALFQILCRLREAMFPGRLPFQGMGGPPPPFMGPYPEPPPPFGPRQYPASPD 474
Query: 162 RFFSPDDDYIPRRSSMDRPGFGSRIATTNTRNNSHSSL----GYAMEQGA--PPVADDA- 214
R+ SP + R PGF R S S G G PP +
Sbjct: 475 RYHSPVGPFHERHCH--GPGFDRPPGPGFDRPPSPMSWTPQPGIDGHPGGMVPPDVNHGF 532
Query: 215 ----QPLYGEDIVF-----RILCPVEKVDRIIGESDGIVEFLQNEVGVDVRVINPVGGSN 265
+P+ E+ V I+ P + + GE+ + +++ G +V V +P G+
Sbjct: 533 ALRNEPIGSENPVMTSANVEIVIPQAYLGHVYGENCSNLNYIKQVSGANVVVHDPKAGTT 592
Query: 266 EQIVIVTSEEGPDDVLFPAQEALLH 290
E +V+V+ D F ++LLH
Sbjct: 593 EGLVVVSGTS--DQAHF--AQSLLH 613
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 93/206 (45%), Gaps = 48/206 (23%)
Query: 220 EDIVFRILCPVEKVDRIIGESDGIVEFLQNEVGVDVRVIN--PVGGSNEQIVIVT----- 272
E + FR+LCP + IIG+ ++ LQ+ G +RVI+ PV S E++V++
Sbjct: 17 ESVHFRLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPVP-SEERVVLIIAPSGK 75
Query: 273 --------------SEE-------------GPDDVLFP--AQEALLHIQTRIV----DLV 299
SEE G DD P AQ ALL + RIV
Sbjct: 76 KKDESNVCDSENPGSEEPKQEKGSECAGTSGGDDEEAPSSAQMALLRVFERIVFGDDAAT 135
Query: 300 LDKDNFIT------TRLVVPSSYIECLDGKDASL-SEIRRLTGANIQILPREELPSCVAK 352
+D D R++V + ++ L K + +IR +GA ++I +++P C
Sbjct: 136 VDGDELDKGESEGLCRMIVRGNQVDYLMSKGGKMIQKIREDSGAIVRISSTDQIPPCAFP 195
Query: 353 TDELVQIVGEIKAARDAVVEVTSRLR 378
D ++Q+ G+ + + A++ VT+ L+
Sbjct: 196 GDVVIQMNGKFSSVKKALLLVTNCLQ 221
>AT5G46190.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:18723435-18725834 REVERSE LENGTH=644
Length = 644
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 137/496 (27%), Positives = 226/496 (45%), Gaps = 56/496 (11%)
Query: 83 LMGKGGKIIEQMRMETKTQIRILPRDHNLPR--CVSMSEEIVQVTGDVNAVKNALEVISS 140
++GK G II+ +R T+ ++++ +D + P C + IV ++G+ +VK AL +S+
Sbjct: 164 VIGKSGSIIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDNIVMISGETESVKKALFAVSA 223
Query: 141 RLRE-SQXXXXXXXXXXXXSPERFFSPDDDYIPRRSSMDRPGFGSRIATTNTRNNSHSSL 199
+ + S P P D I ++ + + S+ + N S +
Sbjct: 224 IMYKVSPREQIPLDTTVQEVPASIIIPSDLSIYPQAGL----YPSQDSIFQHGANVSSFI 279
Query: 200 GYAMEQGAPPVADDAQPLYG----------------EDIVFRILCPVEKVDRIIGESDGI 243
G + QG A + P++ E + +++C K+ R+IG+
Sbjct: 280 G-TLPQGYGENAANPVPVFSASALPVVHGFGGSSRSEKLAIKVICSSSKIGRVIGKGGLT 338
Query: 244 VEFLQNEVGVDVRVINPVGGSNEQIVI-VTSEEGPDDVLFPAQEALLHIQTRIVDLVLDK 302
++ ++ G + V + ++ VI VT+ E PDD+ A EA+L +Q +I D DK
Sbjct: 339 IKGIRQASGSHIEVNDSRTNHDDDCVITVTATESPDDLKSMAVEAVLLLQEKINDEDEDK 398
Query: 303 DNFITTRLVVPSSYIECLDGKDASL-SEIRRLTGANIQILPREELPSCVAKTDELVQIVG 361
+ +L+V S I C+ GK S+ SEIR+ T A+I I P C DELV+I G
Sbjct: 399 ---VKMQLLVSSKVIGCIIGKSGSIISEIRKRTKADIHISKGNNTPKCADPNDELVEISG 455
Query: 362 EIKAARDAVVEVTSRLRSYLYRD--FFQRDIVPPSASLPGFEASSSNNISLVAETSSIYQ 419
E+ RDA++++ RLR + RD R+ PP+ S SSS++ + +A S
Sbjct: 456 EVSNVRDALIQIVLRLRDDVLRDRETGSRN-QPPARSENNNFFSSSSSNTGLALPQSFMS 514
Query: 420 NVQSMAAA--------------LPSKESGG----SSFEAGKQKESDRGDDVLGSLNRLAV 461
+V +A+ LPS SGG SF G + L
Sbjct: 515 SVPQVASVDFNRRPETGSSMSMLPS--SGGIYGYGSFPVGNTSYG----SNSSYSSNLYG 568
Query: 462 PLVTRSTLEVVIPEYAVPKLTAKSRSKLAQISELSGANVTLVEDRPDVTQKIIQISGTPE 521
L +T+EV IP AV K+ + L I +SGA + + + + ++ ISGT E
Sbjct: 569 GLPQSTTMEVRIPANAVGKVMGRGGGNLDNIRRISGAMIEISDSKNSHGGRVALISGTSE 628
Query: 522 QAERAQSLLQGFILST 537
Q A++L Q FI+ST
Sbjct: 629 QKRTAENLFQAFIMST 644
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 113/241 (46%), Gaps = 34/241 (14%)
Query: 222 IVFRILCPVEKVDRIIGESDGIVEFLQNEVGVDVRVINPVGGSNEQIVIV--TSEEGPDD 279
+V+RILCP + +IG+S ++ ++ E ++V++P G +E+++ + + E D
Sbjct: 44 VVYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITIFCSVSEKKDI 103
Query: 280 V------------LFPAQEALLHIQTRIV--------DLVLDKDNFITTRLVVPSSYIEC 319
V L AQ ALL + IV + +D+D+F RL+VPSS
Sbjct: 104 VDIEYSELDYSVPLCSAQAALLKVHDAIVASLATAAENTKIDRDDFRECRLLVPSSQCSI 163
Query: 320 LDGKDAS-LSEIRRLTGANIQILPRE-ELPS--CVAKTDELVQIVGEIKAARDAVVEVTS 375
+ GK S + IR T AN++++ ++ PS C D +V I GE ++ + A+ V++
Sbjct: 164 VIGKSGSIIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDNIVMISGETESVKKALFAVSA 223
Query: 376 RLRSYLYRDFFQRDI----VPPSASLPGFEASSSNNISLVAETSSIYQ---NVQSMAAAL 428
+ R+ D VP S +P + S L SI+Q NV S L
Sbjct: 224 IMYKVSPREQIPLDTTVQEVPASIIIPS-DLSIYPQAGLYPSQDSIFQHGANVSSFIGTL 282
Query: 429 P 429
P
Sbjct: 283 P 283
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 80 VGCLMGKGGKIIEQMRMETKTQIRILPRDHNLPRCVSMSEEIVQVTGDVNAVKNALEVIS 139
+GC++GK G II ++R TK I I + +N P+C ++E+V+++G+V+ V++AL I
Sbjct: 410 IGCIIGKSGSIISEIRKRTKADIHI-SKGNNTPKCADPNDELVEISGEVSNVRDALIQIV 468
Query: 140 SRLRE 144
RLR+
Sbjct: 469 LRLRD 473
>AT5G64390.1 | Symbols: HEN4 | RNA-binding KH domain-containing
protein | chr5:25743442-25747380 FORWARD LENGTH=857
Length = 857
Score = 129 bits (323), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 111/185 (60%), Gaps = 7/185 (3%)
Query: 220 EDIVFRILCPVEKVDRIIGESDGIVEFLQNEVGVDVRVINPVGGSNEQIVIVTSEEGPDD 279
+D+VF+ILC E +IG +V L +E G + V N + E+++ VT+ E P+
Sbjct: 450 QDVVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPEC 509
Query: 280 VLFPAQEALLHIQTRIVDLVLDK--DN----FITTRLVVPSSYIECLDGKDASL-SEIRR 332
PAQ+A++ I +R+ +L +K DN IT RLVVP+S I C+ GK + SE+R+
Sbjct: 510 QSSPAQKAIMLIFSRLFELATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVSEMRK 569
Query: 333 LTGANIQILPREELPSCVAKTDELVQIVGEIKAARDAVVEVTSRLRSYLYRDFFQRDIVP 392
TGA IQIL E+ P C+++ D++VQI GE R+A+ +TSRLR ++ + + +
Sbjct: 570 TTGAAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRDSVFSNSMKNSLAK 629
Query: 393 PSASL 397
S++L
Sbjct: 630 SSSAL 634
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 72/141 (51%), Gaps = 12/141 (8%)
Query: 80 VGCLMGKGGKIIEQMRMETKTQIRILPRDHNLPRCVSMSEEIVQVTGDVNAVKNALEVIS 139
+GC++GKGG I+ +MR T I+IL + N P+C+S ++++VQ+TG+ V+ A+ I+
Sbjct: 553 IGCVLGKGGVIVSEMRKTTGAAIQILKVEQN-PKCISENDQVVQITGEFPNVREAIFHIT 611
Query: 140 SRLRES----QXXXXXXXXXXXXSPERFFSPDDD---YIPRRSSMDRPGFGS----RIAT 188
SRLR+S + ERF+ D I S+ P S R +
Sbjct: 612 SRLRDSVFSNSMKNSLAKSSSALTTERFYDRQSDNPLSIGSHQSVSNPATNSSSLHRRSE 671
Query: 189 TNTRNNSHSSLGYAMEQGAPP 209
+ + SHSS+ Y+ G P
Sbjct: 672 DSFLSGSHSSVNYSRSVGTDP 692
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 85/179 (47%), Gaps = 25/179 (13%)
Query: 223 VFRILCPVEKVDRIIGESDGIVEFLQNEVGVDVRVINPVGGSNEQIVIVTSEE------- 275
FR+LCP+ V +IG+S +++ LQ G +RV P GS ++++ + ++
Sbjct: 48 AFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSRVK 107
Query: 276 -GPDD-------------VLFPAQEALLHIQTRIVDLVLDKDNFITTRLVVPSSYIECLD 321
G ++ + AQ AL+ + ++ D D + RL+ SS+ +
Sbjct: 108 LGANNNGNAEGEKKEEEVEVSKAQGALIKV-FELLAAEADSDT-VVCRLLTESSHAGAVI 165
Query: 322 GKDASL-SEIRRLTGANIQILPREELPSCVAKTDELVQIVGEIKAARDAVVEVTSRLRS 379
GK + IR+ TG I I E LP C DE+V++ G A + A+V ++ L++
Sbjct: 166 GKGGQMVGSIRKETGCKISIRI-ENLPICADTDDEMVEVEGNAIAVKKALVSISRCLQN 223
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 69/133 (51%), Gaps = 10/133 (7%)
Query: 404 SSNNISLVAETSSIYQNVQSMAAALPSKESGGSSFEAGKQKESDRGDDVLGSLNRLAVPL 463
S N+ L S ++ + A S SGG S S R VLGS ++ A+
Sbjct: 723 SDNSHHLTEAPSRLWASPPPAAPRGLSDASGGLS--------SARAGHVLGSGHKSAI-- 772
Query: 464 VTRSTLEVVIPEYAVPKLTAKSRSKLAQISELSGANVTLVEDRPDVTQKIIQISGTPEQA 523
VT +T+E+ +P A+ + + L Q+ ++SGA V + E + +II ISGTP+Q
Sbjct: 773 VTNTTVEIRVPANAMSFVYGEQGYNLEQLRQISGARVIIHEPPLGTSDRIIVISGTPDQT 832
Query: 524 ERAQSLLQGFILS 536
+ AQ+LL FIL+
Sbjct: 833 QAAQNLLHAFILT 845
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 79 HVGCLMGKGGKIIEQMRMETKTQIRILPRDHNLPRCVSMSEEIVQVTGDVNAVKNALEVI 138
H G ++GKGG+++ +R ET +I I R NLP C +E+V+V G+ AVK AL I
Sbjct: 160 HAGAVIGKGGQMVGSIRKETGCKISI--RIENLPICADTDDEMVEVEGNAIAVKKALVSI 217
Query: 139 SSRLRESQ 146
S L+ Q
Sbjct: 218 SRCLQNCQ 225
>AT5G64390.3 | Symbols: HEN4 | RNA-binding KH domain-containing
protein | chr5:25743442-25747380 FORWARD LENGTH=866
Length = 866
Score = 129 bits (323), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 111/185 (60%), Gaps = 7/185 (3%)
Query: 220 EDIVFRILCPVEKVDRIIGESDGIVEFLQNEVGVDVRVINPVGGSNEQIVIVTSEEGPDD 279
+D+VF+ILC E +IG +V L +E G + V N + E+++ VT+ E P+
Sbjct: 450 QDVVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPEC 509
Query: 280 VLFPAQEALLHIQTRIVDLVLDK--DN----FITTRLVVPSSYIECLDGKDASL-SEIRR 332
PAQ+A++ I +R+ +L +K DN IT RLVVP+S I C+ GK + SE+R+
Sbjct: 510 QSSPAQKAIMLIFSRLFELATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVSEMRK 569
Query: 333 LTGANIQILPREELPSCVAKTDELVQIVGEIKAARDAVVEVTSRLRSYLYRDFFQRDIVP 392
TGA IQIL E+ P C+++ D++VQI GE R+A+ +TSRLR ++ + + +
Sbjct: 570 TTGAAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRDSVFSNSMKNSLAK 629
Query: 393 PSASL 397
S++L
Sbjct: 630 SSSAL 634
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 72/141 (51%), Gaps = 12/141 (8%)
Query: 80 VGCLMGKGGKIIEQMRMETKTQIRILPRDHNLPRCVSMSEEIVQVTGDVNAVKNALEVIS 139
+GC++GKGG I+ +MR T I+IL + N P+C+S ++++VQ+TG+ V+ A+ I+
Sbjct: 553 IGCVLGKGGVIVSEMRKTTGAAIQILKVEQN-PKCISENDQVVQITGEFPNVREAIFHIT 611
Query: 140 SRLRES----QXXXXXXXXXXXXSPERFFSPDDD---YIPRRSSMDRPGFGS----RIAT 188
SRLR+S + ERF+ D I S+ P S R +
Sbjct: 612 SRLRDSVFSNSMKNSLAKSSSALTTERFYDRQSDNPLSIGSHQSVSNPATNSSSLHRRSE 671
Query: 189 TNTRNNSHSSLGYAMEQGAPP 209
+ + SHSS+ Y+ G P
Sbjct: 672 DSFLSGSHSSVNYSRSVGTDP 692
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 85/179 (47%), Gaps = 25/179 (13%)
Query: 223 VFRILCPVEKVDRIIGESDGIVEFLQNEVGVDVRVINPVGGSNEQIVIVTSEE------- 275
FR+LCP+ V +IG+S +++ LQ G +RV P GS ++++ + ++
Sbjct: 48 AFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSRVK 107
Query: 276 -GPDD-------------VLFPAQEALLHIQTRIVDLVLDKDNFITTRLVVPSSYIECLD 321
G ++ + AQ AL+ + ++ D D + RL+ SS+ +
Sbjct: 108 LGANNNGNAEGEKKEEEVEVSKAQGALIKV-FELLAAEADSDT-VVCRLLTESSHAGAVI 165
Query: 322 GKDASL-SEIRRLTGANIQILPREELPSCVAKTDELVQIVGEIKAARDAVVEVTSRLRS 379
GK + IR+ TG I I E LP C DE+V++ G A + A+V ++ L++
Sbjct: 166 GKGGQMVGSIRKETGCKISIRI-ENLPICADTDDEMVEVEGNAIAVKKALVSISRCLQN 223
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 404 SSNNISLVAETSSIYQNVQSMAAALPSKESGGSSFEAGKQKESDRGDDVLGSLNRLAV-- 461
S N+ L S ++ + A S SGG S S R VLGSL+ V
Sbjct: 723 SDNSHHLTEAPSRLWASPPPAAPRGLSDASGGLS--------SARAGHVLGSLHARLVFS 774
Query: 462 -----PLVTRSTLEVVIPEYAVPKLTAKSRSKLAQISELSGANVTLVEDRPDVTQKIIQI 516
+VT +T+E+ +P A+ + + L Q+ ++SGA V + E + +II I
Sbjct: 775 SGHKSAIVTNTTVEIRVPANAMSFVYGEQGYNLEQLRQISGARVIIHEPPLGTSDRIIVI 834
Query: 517 SGTPEQAERAQSLLQGFILS 536
SGTP+Q + AQ+LL FIL+
Sbjct: 835 SGTPDQTQAAQNLLHAFILT 854
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 79 HVGCLMGKGGKIIEQMRMETKTQIRILPRDHNLPRCVSMSEEIVQVTGDVNAVKNALEVI 138
H G ++GKGG+++ +R ET +I I R NLP C +E+V+V G+ AVK AL I
Sbjct: 160 HAGAVIGKGGQMVGSIRKETGCKISI--RIENLPICADTDDEMVEVEGNAIAVKKALVSI 217
Query: 139 SSRLRESQ 146
S L+ Q
Sbjct: 218 SRCLQNCQ 225
>AT5G64390.2 | Symbols: HEN4 | RNA-binding KH domain-containing
protein | chr5:25743442-25746742 FORWARD LENGTH=824
Length = 824
Score = 129 bits (323), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 111/185 (60%), Gaps = 7/185 (3%)
Query: 220 EDIVFRILCPVEKVDRIIGESDGIVEFLQNEVGVDVRVINPVGGSNEQIVIVTSEEGPDD 279
+D+VF+ILC E +IG +V L +E G + V N + E+++ VT+ E P+
Sbjct: 450 QDVVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPEC 509
Query: 280 VLFPAQEALLHIQTRIVDLVLDK--DN----FITTRLVVPSSYIECLDGKDASL-SEIRR 332
PAQ+A++ I +R+ +L +K DN IT RLVVP+S I C+ GK + SE+R+
Sbjct: 510 QSSPAQKAIMLIFSRLFELATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVSEMRK 569
Query: 333 LTGANIQILPREELPSCVAKTDELVQIVGEIKAARDAVVEVTSRLRSYLYRDFFQRDIVP 392
TGA IQIL E+ P C+++ D++VQI GE R+A+ +TSRLR ++ + + +
Sbjct: 570 TTGAAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRDSVFSNSMKNSLAK 629
Query: 393 PSASL 397
S++L
Sbjct: 630 SSSAL 634
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 72/141 (51%), Gaps = 12/141 (8%)
Query: 80 VGCLMGKGGKIIEQMRMETKTQIRILPRDHNLPRCVSMSEEIVQVTGDVNAVKNALEVIS 139
+GC++GKGG I+ +MR T I+IL + N P+C+S ++++VQ+TG+ V+ A+ I+
Sbjct: 553 IGCVLGKGGVIVSEMRKTTGAAIQILKVEQN-PKCISENDQVVQITGEFPNVREAIFHIT 611
Query: 140 SRLRES----QXXXXXXXXXXXXSPERFFSPDDD---YIPRRSSMDRPGFGS----RIAT 188
SRLR+S + ERF+ D I S+ P S R +
Sbjct: 612 SRLRDSVFSNSMKNSLAKSSSALTTERFYDRQSDNPLSIGSHQSVSNPATNSSSLHRRSE 671
Query: 189 TNTRNNSHSSLGYAMEQGAPP 209
+ + SHSS+ Y+ G P
Sbjct: 672 DSFLSGSHSSVNYSRSVGTDP 692
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 85/179 (47%), Gaps = 25/179 (13%)
Query: 223 VFRILCPVEKVDRIIGESDGIVEFLQNEVGVDVRVINPVGGSNEQIVIVTSEE------- 275
FR+LCP+ V +IG+S +++ LQ G +RV P GS ++++ + ++
Sbjct: 48 AFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSRVK 107
Query: 276 -GPDD-------------VLFPAQEALLHIQTRIVDLVLDKDNFITTRLVVPSSYIECLD 321
G ++ + AQ AL+ + ++ D D + RL+ SS+ +
Sbjct: 108 LGANNNGNAEGEKKEEEVEVSKAQGALIKV-FELLAAEADSDT-VVCRLLTESSHAGAVI 165
Query: 322 GKDASL-SEIRRLTGANIQILPREELPSCVAKTDELVQIVGEIKAARDAVVEVTSRLRS 379
GK + IR+ TG I I E LP C DE+V++ G A + A+V ++ L++
Sbjct: 166 GKGGQMVGSIRKETGCKISIRI-ENLPICADTDDEMVEVEGNAIAVKKALVSISRCLQN 223
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 79 HVGCLMGKGGKIIEQMRMETKTQIRILPRDHNLPRCVSMSEEIVQVTGDVNAVKNALEVI 138
H G ++GKGG+++ +R ET +I I R NLP C +E+V+V G+ AVK AL I
Sbjct: 160 HAGAVIGKGGQMVGSIRKETGCKISI--RIENLPICADTDDEMVEVEGNAIAVKKALVSI 217
Query: 139 SSRLRESQ 146
S L+ Q
Sbjct: 218 SRCLQNCQ 225
>AT2G22600.1 | Symbols: | RNA-binding KH domain-containing protein
| chr2:9596617-9599050 FORWARD LENGTH=632
Length = 632
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 131/520 (25%), Positives = 219/520 (42%), Gaps = 104/520 (20%)
Query: 79 HVGCLMGKGGKIIEQMRMETKTQIRILPRDHNLPRCVSMSEEIVQVTGDVNAVKNALEVI 138
+G ++G GGK +E MR + IR+LP P C + ++E++Q+TGDV AVK AL ++
Sbjct: 150 QIGAVLGLGGKNVEWMRRNSGAMIRVLPP----PICGTKNDELIQITGDVLAVKKALVMV 205
Query: 139 SSRLRESQXXXXXXXXXXXXSPERFFS------PDDDYIP--RRSSMDRPGFGSRIATTN 190
SS ++ + E + P ++ P R SS+ AT
Sbjct: 206 SSYIQNNAPLNGYPPPLSIKGYESLSTDGNSEDPHSEFFPNLRSSSLSN-------ATEI 258
Query: 191 TRNNSHSSLGYAMEQGAPPVADDAQPLYGEDIVFRILCPVEKVDRIIGESDGIVEFLQNE 250
+N H L Y D +VF+I+ IIG+ I+ LQNE
Sbjct: 259 VASNRH--LPY-----------DGGNSTERKVVFKIIFTSVVAGGIIGKQGTIIRALQNE 305
Query: 251 VGVDVRVINPVGGSNEQIVIVTSEEGPDDVLFPAQEALLHIQTRIVDLVLDK-------- 302
G + V P+ S E++V V++ E + AQ AL + R V++ ++K
Sbjct: 306 TGASISVGAPLKVSGERVVTVSARENLESRYSHAQNALALVFARSVEIDVEKGLRPGLHN 365
Query: 303 DNFITTRLVVPSSYIECLDGKDASLSEIRRLTGANIQILPREELPSCVAKTDELVQIVGE 362
+ T+L+VPS + +G + I TGA++ I ++ +++ + +++I GE
Sbjct: 366 GAIVKTKLLVPSHFANSFNGNGNREAII--ATGADVHISVGNQVLEWISENEVVIEIKGE 423
Query: 363 IKAARDAVVEVTSRLRSYLYRDFFQRDIVPPSASLPGFEASSSNNISLVAETSSIYQNVQ 422
+ A+ V+S+LR L P L A SN S IY N+Q
Sbjct: 424 YSHVQKALTHVSSKLRENLL----------PKKVLGEMRARVSNPYESAGGRSQIY-NLQ 472
Query: 423 ------------SMAAALPSKE---SGGSSFEAGKQKESDRGDDVLGSLNRLAVPL---- 463
S++AA+P + SG ++ ++ +V LN +P
Sbjct: 473 PSQQDASRGDSLSVSAAVPDLKMVRSGAEVLKSNSVMHTEVLKEV-DELNDFTLPQSLLE 531
Query: 464 -----------------------------VTRSTLEVVIPEYAVPKLTAKSRSKLAQISE 494
V + TLE+ + + A+ L + + + + +
Sbjct: 532 EDLTQGMKQLQMSSNGDVSSLPPRSKGVSVRKITLELAVEKDALGSLYGRDGTGVDNLQQ 591
Query: 495 LSGANVTLVEDRPDVTQKIIQISGTPEQAERAQSLLQGFI 534
+SGANV V+D P T+ + ISG PEQA A SL++ +
Sbjct: 592 ISGANVD-VKD-PTGTEATVLISGNPEQARTAMSLIESIL 629
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 94/219 (42%), Gaps = 40/219 (18%)
Query: 220 EDIVFRILCPVEKVDRIIGESDGIVEFLQNEVGVDVRVINPVGGSNEQIVIVTSEEGPDD 279
++ R++C + IIG + +V L+ E G + +PV GS+ +V + +
Sbjct: 23 DETAIRVVCHASVIGGIIGSNGYVVSKLRRETGTKIHCESPVNGSDHWVVFIVGSTAVNQ 82
Query: 280 VLF----------------------PAQEALLHIQTRIVDLVLDKDNFITTRLVVPSSYI 317
+ AQ AL+ + R ++ KD +Y
Sbjct: 83 SILLTDRVGEFSGGEHEDWVTCEVSAAQTALIRVLERSWVVLAAKDGGGVVDGEDEEAYC 142
Query: 318 ECLDGKD----------ASLSEIRRLTGANIQILPREELPSCVAKTDELVQIVGEIKAAR 367
L ++ ++ +RR +GA I++LP P C K DEL+QI G++ A +
Sbjct: 143 GILADRNQIGAVLGLGGKNVEWMRRNSGAMIRVLPP---PICGTKNDELIQITGDVLAVK 199
Query: 368 DAVVEVTSRLRSYLYRDFFQRDIVPPSASLPGFEASSSN 406
A+V V+S +++ + + PP S+ G+E+ S++
Sbjct: 200 KALVMVSSYIQNNAPLNGY-----PPPLSIKGYESLSTD 233
>AT1G14170.1 | Symbols: | RNA-binding KH domain-containing protein
| chr1:4843463-4845253 REVERSE LENGTH=454
Length = 454
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 99/307 (32%), Positives = 162/307 (52%), Gaps = 42/307 (13%)
Query: 80 VGCLMGKGGKIIEQMRMETKTQIRILPRDHNLPRC-VSMS-EEIVQVTGDVNAVKNALEV 137
+GC++GKGG++I+ +R +T QIR++ +DH LP C +++S +E++ + G+ V+ AL
Sbjct: 132 IGCVIGKGGQVIQNLRNDTNAQIRVI-KDH-LPACALTLSHDELLLIIGEPLVVREALYQ 189
Query: 138 ISSRLRESQXXXXXXXXXXXXSPERFFSPDDDYIPRRSSMDRPG--FGSRIATTNTRNNS 195
++S L ++ P RF SSM +PG S T++ RN
Sbjct: 190 VASLLHDN--------------PSRF--QHLLLSSSSSSMHQPGAMLMSAALTSSHRN-- 231
Query: 196 HSSLGYAMEQGAPPVADDAQPLYGEDIVFRILCPVEKVDRIIGESDGIVEFLQNEVGVDV 255
YA+ + +AD + +CP E V +IG+ G + ++ E G +
Sbjct: 232 -----YAVRRD---IAD------AREFCVCFICPAENVGGVIGKGGGFINQIRQETGATI 277
Query: 256 RVINPVGGSNEQIVIVTSEEGPDDVLFPAQEALLHIQTRIVDLVLDKDN--FITTRLVVP 313
RV ++ I+ ++S+E +D PA A + +Q R + V N I+TRL+V
Sbjct: 278 RVNTSETDDDDCIIFISSKEFYED-QSPAVNAAIRLQQRCSEKVGKDANDLAISTRLLVS 336
Query: 314 SSYIECLDGKD-ASLSEIRRLTGANIQILPREELPSCVAKTDELVQIVGEIKAARDAVVE 372
SS I CL GK A +SE+R +T ANI+IL +E++P + +E+VQI G AA A+ +
Sbjct: 337 SSQIGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIAREDEEMVQITGSPDAAMKALTQ 396
Query: 373 VTSRLRS 379
V RLR+
Sbjct: 397 VILRLRA 403
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 98/187 (52%), Gaps = 22/187 (11%)
Query: 213 DAQPLYGEDIVFRILCPVEKVDRIIGESDGIVEFLQNEVGVDVRVINPVGGSNEQIVIV- 271
D + ED V+R LCPV+K IIG+ I + +++E ++R+ + G E++V +
Sbjct: 10 DQNVIASEDTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMY 69
Query: 272 -TSEE----GPD-DVLFPAQEALLHIQTRIV-----------DLVLDKDNFITTRLVVPS 314
T+EE G D +++ PA +AL + +V D L + +T R++VPS
Sbjct: 70 STNEELNHFGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPS 129
Query: 315 SYIECLDGKDAS-LSEIRRLTGANIQILPREELPSC--VAKTDELVQIVGEIKAARDAVV 371
I C+ GK + +R T A I+++ ++ LP+C DEL+ I+GE R+A+
Sbjct: 130 DQIGCVIGKGGQVIQNLRNDTNAQIRVI-KDHLPACALTLSHDELLLIIGEPLVVREALY 188
Query: 372 EVTSRLR 378
+V S L
Sbjct: 189 QVASLLH 195
>AT1G14170.3 | Symbols: | RNA-binding KH domain-containing protein
| chr1:4843463-4845253 REVERSE LENGTH=479
Length = 479
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 99/307 (32%), Positives = 162/307 (52%), Gaps = 42/307 (13%)
Query: 80 VGCLMGKGGKIIEQMRMETKTQIRILPRDHNLPRC-VSMS-EEIVQVTGDVNAVKNALEV 137
+GC++GKGG++I+ +R +T QIR++ +DH LP C +++S +E++ + G+ V+ AL
Sbjct: 157 IGCVIGKGGQVIQNLRNDTNAQIRVI-KDH-LPACALTLSHDELLLIIGEPLVVREALYQ 214
Query: 138 ISSRLRESQXXXXXXXXXXXXSPERFFSPDDDYIPRRSSMDRPG--FGSRIATTNTRNNS 195
++S L ++ P RF SSM +PG S T++ RN
Sbjct: 215 VASLLHDN--------------PSRF--QHLLLSSSSSSMHQPGAMLMSAALTSSHRN-- 256
Query: 196 HSSLGYAMEQGAPPVADDAQPLYGEDIVFRILCPVEKVDRIIGESDGIVEFLQNEVGVDV 255
YA+ + +AD + +CP E V +IG+ G + ++ E G +
Sbjct: 257 -----YAVRR---DIAD------AREFCVCFICPAENVGGVIGKGGGFINQIRQETGATI 302
Query: 256 RVINPVGGSNEQIVIVTSEEGPDDVLFPAQEALLHIQTRIVDLVLDKDN--FITTRLVVP 313
RV ++ I+ ++S+E +D PA A + +Q R + V N I+TRL+V
Sbjct: 303 RVNTSETDDDDCIIFISSKEFYED-QSPAVNAAIRLQQRCSEKVGKDANDLAISTRLLVS 361
Query: 314 SSYIECLDGKD-ASLSEIRRLTGANIQILPREELPSCVAKTDELVQIVGEIKAARDAVVE 372
SS I CL GK A +SE+R +T ANI+IL +E++P + +E+VQI G AA A+ +
Sbjct: 362 SSQIGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIAREDEEMVQITGSPDAAMKALTQ 421
Query: 373 VTSRLRS 379
V RLR+
Sbjct: 422 VILRLRA 428
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 98/187 (52%), Gaps = 22/187 (11%)
Query: 213 DAQPLYGEDIVFRILCPVEKVDRIIGESDGIVEFLQNEVGVDVRVINPVGGSNEQIVIV- 271
D + ED V+R LCPV+K IIG+ I + +++E ++R+ + G E++V +
Sbjct: 35 DQNVIASEDTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMY 94
Query: 272 -TSEE----GPD-DVLFPAQEALLHIQTRIV-----------DLVLDKDNFITTRLVVPS 314
T+EE G D +++ PA +AL + +V D L + +T R++VPS
Sbjct: 95 STNEELNHFGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPS 154
Query: 315 SYIECLDGKDAS-LSEIRRLTGANIQILPREELPSC--VAKTDELVQIVGEIKAARDAVV 371
I C+ GK + +R T A I+++ ++ LP+C DEL+ I+GE R+A+
Sbjct: 155 DQIGCVIGKGGQVIQNLRNDTNAQIRVI-KDHLPACALTLSHDELLLIIGEPLVVREALY 213
Query: 372 EVTSRLR 378
+V S L
Sbjct: 214 QVASLLH 220
>AT1G14170.2 | Symbols: | RNA-binding KH domain-containing protein
| chr1:4843463-4845253 REVERSE LENGTH=446
Length = 446
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 99/307 (32%), Positives = 162/307 (52%), Gaps = 42/307 (13%)
Query: 80 VGCLMGKGGKIIEQMRMETKTQIRILPRDHNLPRC-VSMS-EEIVQVTGDVNAVKNALEV 137
+GC++GKGG++I+ +R +T QIR++ +DH LP C +++S +E++ + G+ V+ AL
Sbjct: 124 IGCVIGKGGQVIQNLRNDTNAQIRVI-KDH-LPACALTLSHDELLLIIGEPLVVREALYQ 181
Query: 138 ISSRLRESQXXXXXXXXXXXXSPERFFSPDDDYIPRRSSMDRPG--FGSRIATTNTRNNS 195
++S L ++ P RF SSM +PG S T++ RN
Sbjct: 182 VASLLHDN--------------PSRF--QHLLLSSSSSSMHQPGAMLMSAALTSSHRN-- 223
Query: 196 HSSLGYAMEQGAPPVADDAQPLYGEDIVFRILCPVEKVDRIIGESDGIVEFLQNEVGVDV 255
YA+ + +AD + +CP E V +IG+ G + ++ E G +
Sbjct: 224 -----YAVRRD---IAD------AREFCVCFICPAENVGGVIGKGGGFINQIRQETGATI 269
Query: 256 RVINPVGGSNEQIVIVTSEEGPDDVLFPAQEALLHIQTRIVDLVLDKDN--FITTRLVVP 313
RV ++ I+ ++S+E +D PA A + +Q R + V N I+TRL+V
Sbjct: 270 RVNTSETDDDDCIIFISSKEFYED-QSPAVNAAIRLQQRCSEKVGKDANDLAISTRLLVS 328
Query: 314 SSYIECLDGKD-ASLSEIRRLTGANIQILPREELPSCVAKTDELVQIVGEIKAARDAVVE 372
SS I CL GK A +SE+R +T ANI+IL +E++P + +E+VQI G AA A+ +
Sbjct: 329 SSQIGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIAREDEEMVQITGSPDAAMKALTQ 388
Query: 373 VTSRLRS 379
V RLR+
Sbjct: 389 VILRLRA 395
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 95/180 (52%), Gaps = 22/180 (12%)
Query: 220 EDIVFRILCPVEKVDRIIGESDGIVEFLQNEVGVDVRVINPVGGSNEQIVIV--TSEE-- 275
D V+R LCPV+K IIG+ I + +++E ++R+ + G E++V + T+EE
Sbjct: 9 HDTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELN 68
Query: 276 --GPD-DVLFPAQEALLHIQTRIV-----------DLVLDKDNFITTRLVVPSSYIECLD 321
G D +++ PA +AL + +V D L + +T R++VPS I C+
Sbjct: 69 HFGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVI 128
Query: 322 GKDAS-LSEIRRLTGANIQILPREELPSC--VAKTDELVQIVGEIKAARDAVVEVTSRLR 378
GK + +R T A I+++ ++ LP+C DEL+ I+GE R+A+ +V S L
Sbjct: 129 GKGGQVIQNLRNDTNAQIRVI-KDHLPACALTLSHDELLLIIGEPLVVREALYQVASLLH 187
>AT4G18375.1 | Symbols: | RNA-binding KH domain-containing protein
| chr4:10152825-10154836 FORWARD LENGTH=532
Length = 532
Score = 105 bits (263), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 110/410 (26%), Positives = 200/410 (48%), Gaps = 76/410 (18%)
Query: 83 LMGKGGKIIEQMRMETKTQIRILPRDHNLPR--CVSMSEEIVQVTGDVNAVKNALEVISS 140
L+GK G+ I+++R T+ ++++ +D + P C + +V ++G+ +VK AL +S+
Sbjct: 153 LIGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSA 212
Query: 141 RL-----RESQXXXXXXXXXXXXS------------PERFFSPDDDYIPRRSSMDRPGFG 183
+ RE+ S P+ F + D+I ++ + P +
Sbjct: 213 IMYKINPRENIPLDSTSQDVPAASVIVPSDLSNSVYPQTGFYSNQDHILQQGA-GVPSYF 271
Query: 184 SRIATTNTRNNSHSSLGYAMEQGAP-PVADDAQPL---YG-----EDIVFRILCPVEKVD 234
+ ++ ++ + GYA P PV + P+ +G E++VF++LCP+ +
Sbjct: 272 NALSVSDFQ-------GYAETAANPVPVFASSLPVTHGFGGSSRSEELVFKVLCPLCNIM 324
Query: 235 RIIGESDGIVEFLQNEVG--VDVRVINPVGGSNEQIVIVTSEEGPDDVLFPAQEALLHIQ 292
R+IG+ ++ ++ G ++V G +E ++IVT+ E PDD+ A EA+L +Q
Sbjct: 325 RVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTATESPDDMKSMAVEAVLLLQ 384
Query: 293 TRIVDLVLDKDNFITTRLVVPSSYIECLDGKDAS-LSEIRRLTGANIQILPREELPSCVA 351
I D D +N + +L+V S I C+ GK S ++EIR+ T ANI I
Sbjct: 385 EYINDE--DAEN-VKMQLLVSSKVIGCVIGKSGSVINEIRKRTNANICISK--------G 433
Query: 352 KTDELVQIVGEIKAARDAVVEVTSRLRSYLYRDFFQRDIV----PPSASLPGFEASSSNN 407
K D+LV++ GE+ + RDA++++ RLR + D +D V PP + ++N
Sbjct: 434 KKDDLVEVSGEVSSVRDALIQIVLRLREDVLGD---KDSVATRKPP---------ARTDN 481
Query: 408 ISLVAETSSIYQNVQSMAAALPSKES--GGSSFEAGKQKESDRGDDVLGS 455
S ++ +S+ + S +++ S G SF A GD+VLGS
Sbjct: 482 CSFLSGSSNAGYTLPSFMSSMASTSGFHGYGSFPA--------GDNVLGS 523
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 96/179 (53%), Gaps = 23/179 (12%)
Query: 220 EDIVFRILCPVEKVDRIIGESDGIVEFLQNEVGVDVRVINPVGGSNEQIVIV--TSEEGP 277
E +V+RILCP++ V +IG+S ++ +++ ++V + + G +++++ + + +E
Sbjct: 34 ELVVYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYCSVKEKQ 93
Query: 278 DDVLFP---------AQEALLHIQTRIV--------DLVLDKDNFITTRLVVPSSYIECL 320
+++ F AQ+ALL + IV +D+D+ RL+VP S L
Sbjct: 94 EEIGFTKSENEPLCCAQDALLKVYDAIVASDEENNTKTNVDRDDNKECRLLVPFSQSSSL 153
Query: 321 DGKDA-SLSEIRRLTGANIQILPRE-ELPS--CVAKTDELVQIVGEIKAARDAVVEVTS 375
GK ++ IRR T A+++++ ++ PS C + D +V I GE ++ + A+ V++
Sbjct: 154 IGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSA 212
>AT3G04610.1 | Symbols: FLK | RNA-binding KH domain-containing
protein | chr3:1250762-1254272 REVERSE LENGTH=577
Length = 577
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 93/350 (26%), Positives = 157/350 (44%), Gaps = 36/350 (10%)
Query: 216 PLYGEDIVFRILCPVEKVDRIIGESDGIVEFLQNEVGVDVRVINPVGGSNEQIVIVTSEE 275
P + + VFR+L P +KV IIG +++ + E +++++ G+ E+ V+V+ +E
Sbjct: 181 PGWPGETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGTTERAVMVSGKE 240
Query: 276 GPDDVLFPAQEALLHIQTRIVDLVLDKD-------NFITTRLVVPSSYIECLDGKD-ASL 327
P+ L P+ + LL + RIVD LD + + ++TRL+VP+S L GK ++
Sbjct: 241 EPESSLPPSMDGLLRVHMRIVD-GLDGEASQAPPPSKVSTRLLVPASQAGSLIGKQGGTV 299
Query: 328 SEIRRLTGANIQILPREELPSCVAKTDELVQIVGEIKAARDAVVEVTSRLRSYLYR---- 383
I+ + +++L E+LP + D +V++VGE + A+ + S LR +L
Sbjct: 300 KAIQEASACIVRVLGSEDLPVFALQDDRVVEVVGEPTSVHRALELIASHLRKFLVDRSII 359
Query: 384 DFF---------QRDIVPP---SASLPGFEASSSNNISLVAETSSIYQNVQSMAAALPSK 431
FF Q D +PP S P A S Q + P
Sbjct: 360 PFFENQMQKPTRQMDHMPPPHQSWGPPQGHAPSVGGGGYGHNPPPYMQPPPRHDSYYPPP 419
Query: 432 ESGGSSFEAGKQKESDRGDDVLGSLNRLAV------PLVTRS-TLEVVIPEYAVPKLTAK 484
E E K+ +G G + V P+V + T ++ IP +
Sbjct: 420 EMRQPPME----KQPHQGISAYGREPPMNVHVSSAPPMVAQQVTQQMQIPLSYADAVIGT 475
Query: 485 SRSKLAQISELSGANVTLVEDRPDVTQKIIQISGTPEQAERAQSLLQGFI 534
S S ++ LSGA VT+ E R + +++SGT Q + A L+Q F+
Sbjct: 476 SGSNISYTRRLSGATVTIQETRGVPGEMTVEVSGTGSQVQTAVQLIQNFM 525
>AT4G26000.1 | Symbols: PEP | RNA-binding KH domain-containing
protein | chr4:13197280-13199539 FORWARD LENGTH=495
Length = 495
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 97/361 (26%), Positives = 165/361 (45%), Gaps = 43/361 (11%)
Query: 211 ADDAQPLYGEDIVFRILCPVEKVDRIIGESDGIVEFLQNEVGVDVRVINPVGGSNEQIVI 270
A++ P + D VFR++ PV KV IIG ++ + E ++V++ + ++IV+
Sbjct: 63 AEERWPGWPGDCVFRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTPDRIVL 122
Query: 271 VTSEEGPDDVLFPAQEALLHIQTRIVDLVLDKDN--------FITTRLVVPSSYIECLDG 322
++ +E P+ + PA +A+L + R+ L + D+ F + RL+V S+ L G
Sbjct: 123 ISGKEEPEAYMSPAMDAVLRVFRRVSGLPDNDDDDVQNAGSVFSSVRLLVASTQAINLIG 182
Query: 323 KDASL-SEIRRLTGANIQILPREELPSCVAKTDELVQIVGE---IKAARDAVVEVTSRL- 377
K SL I +GA+++IL EE P A+ + +V + GE I A +A+V R
Sbjct: 183 KQGSLIKSIVENSGASVRILSEEETPFYAAQDERIVDLQGEALKILKALEAIVGHLRRFL 242
Query: 378 ----------RSYLYRDFFQRDIVPPSASLPGFEASSSN----NISLVAETSSIYQNVQS 423
+ YL R R P + S SSN + SL+A ++ S
Sbjct: 243 VDHTVVPLFEKQYLARVSQTRQEEPLAESKSSLHTISSNLMEPDFSLLARREPLFLERDS 302
Query: 424 MAAALPSKESGGSSFEAGKQKESDRGDDVLGS-----LNRLAVPLVTRSTLEVVIPEYAV 478
+ + SG S + D VL + L R++ VT+ + + IP
Sbjct: 303 RVDSR-VQPSGVSIYSQ---------DPVLSARHSPGLARVSSAFVTQVSQTMQIPFSYA 352
Query: 479 PKLTAKSRSKLAQISELSGANVTLVEDRPDVTQKIIQISGTPEQAERAQSLLQGFILSTQ 538
+ + +A I SGA +T+ E P Q ++I GT Q + A+ L+Q FI++ +
Sbjct: 353 EDIIGVEGANIAYIRRRSGATITIKES-PHPDQITVEIKGTTSQVQTAEQLIQEFIINHK 411
Query: 539 E 539
E
Sbjct: 412 E 412
>AT5G09560.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:2967170-2969655 FORWARD LENGTH=612
Length = 612
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 91/356 (25%), Positives = 160/356 (44%), Gaps = 71/356 (19%)
Query: 79 HVGCLMGKGGKIIEQMRMETKTQIRILPRDHNLPRCVSMSEEIVQVTGD-VNAVKNALEV 137
HV ++GK G++++++ ET +++ R H+L C + + ++++ G+ ++AV AL
Sbjct: 147 HVVTVIGKNGELMQRILEETGCNVQL--RSHDLSICTNPGDVVLKIEGNRLSAVMKALVS 204
Query: 138 ISSRLR-----ESQXXXXXXXXXXXXSPERF-------------------FSPDDDYI-- 171
ISSRL+ + P + S +D +
Sbjct: 205 ISSRLQACPPISTASLHAEAVPDALRRPMEYRSQQYREVDPHGSLHRHVEISQEDALVRP 264
Query: 172 -------PRRSSMDRPGFGSRIATTNTRNNSHSSLGYAMEQGAPPVADDAQPLYGE---- 220
PR + P + R+ T+ ++N PPV QPL
Sbjct: 265 FFRTITQPRIDYLPHPSYDHRLITSASKN--------------PPVTIK-QPLQASKDDI 309
Query: 221 -DIVFRILCPVEKVDRIIGESDGIVEFLQNEVGVDVRVINPVGGSNEQIVIVTSEEGPDD 279
+ +ILC ES +V ++ + V + +E++V +T+ E D
Sbjct: 310 RQVDLKILCS--------NESASVVIKTRSVTDASISVGDRHPDCDERLVTITAFEKTKD 361
Query: 280 VLFPAQEALLHIQTRIVD----LVLDK--DNFITTRLVVPSSYIECLDGKDASL-SEIRR 332
+ +Q AL+ + + + + VLD + IT RLVV S+ I CL G++ + + I++
Sbjct: 362 ITSESQRALVLVFSNMYENATAKVLDSGLTSSITARLVVRSNQINCLLGEEGRIKTTIQQ 421
Query: 333 LTGANIQILPREELPSCVAKTDELVQIVGEIKAARDAVVEVTSRLRSYLYRDFFQR 388
TGA I +L E+ P CV++ +++VQI GE R+A+ +VTS LR L FQR
Sbjct: 422 RTGAFITVLNVEQNPKCVSENNQVVQISGEFPNVREAINQVTSMLREDLINQSFQR 477
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Query: 80 VGCLMGKGGKIIEQMRMETKTQIRILPRDHNLPRCVSMSEEIVQVTGDVNAVKNALEVIS 139
+ CL+G+ G+I ++ T I +L + N P+CVS + ++VQ++G+ V+ A+ ++
Sbjct: 405 INCLLGEEGRIKTTIQQRTGAFITVLNVEQN-PKCVSENNQVVQISGEFPNVREAINQVT 463
Query: 140 SRLRE---SQXXXXXXXXXXXXSPERF---FSPDDDYIP---RRSSMD 178
S LRE +Q S + F FSP Y P R S+MD
Sbjct: 464 SMLREDLINQSFQRGSQYAVNYSEDPFPELFSPTAGYTPTFGRSSTMD 511
>AT5G53060.2 | Symbols: | RNA-binding KH domain-containing protein
| chr5:21515355-21520310 FORWARD LENGTH=198
Length = 198
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/41 (78%), Positives = 36/41 (87%)
Query: 1 MPGDEERIIEISDTRRQDPDRRMPSFSPAQEALLMIHERIL 41
+PGD ERIIEISD RR+DPD RMPSFSPAQEAL +H+RIL
Sbjct: 107 VPGDAERIIEISDNRRRDPDGRMPSFSPAQEALFSVHDRIL 147
>AT2G03110.1 | Symbols: | RNA binding;nucleic acid binding |
chr2:935432-935975 FORWARD LENGTH=153
Length = 153
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 46/66 (69%), Gaps = 4/66 (6%)
Query: 79 HVGCLMGKGGKIIEQMRMETKTQIRILPRDHNLPRC-VSMS-EEIVQVTGDVNAVKNALE 136
+G L+GKGG II+ +R +T QIR+ R+ NLP C +++S +E++Q+ GD +AV+ AL
Sbjct: 83 QIGYLIGKGGPIIQTLRNDTNAQIRV--RNDNLPMCALALSHDELLQIIGDPSAVREALY 140
Query: 137 VISSRL 142
++ L
Sbjct: 141 QVAFLL 146