Miyakogusa Predicted Gene

Lj1g3v0958830.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0958830.1 tr|G7J7E9|G7J7E9_MEDTR Soluble starch synthase
OS=Medicago truncatula GN=MTR_3g091570 PE=3
SV=1,84.21,0,UDP-Glycosyltransferase/glycogen phosphorylase,NULL;
STARCH SYNTHASE,NULL; GLYCOSYLTRANSFERASE,NULL;,CUFF.26581.1
         (149 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24300.2 | Symbols: SSI1 | Glycogen/starch synthases, ADP-glu...   228   2e-60
AT5G24300.1 | Symbols: SSI1, SSI, ATSS1 | Glycogen/starch syntha...   228   2e-60
AT3G01180.1 | Symbols: AtSS2, SS2 | starch synthase 2 | chr3:624...   184   2e-47
AT1G32900.1 | Symbols:  | UDP-Glycosyltransferase superfamily pr...   100   3e-22
AT1G11720.2 | Symbols: SS3 | starch synthase 3 | chr1:3951597-39...   100   4e-22
AT1G11720.1 | Symbols: ATSS3, SS3 | starch synthase 3 | chr1:395...   100   5e-22
AT4G18240.1 | Symbols: ATSS4, SSIV, SS4 | starch synthase 4 | ch...    89   1e-18

>AT5G24300.2 | Symbols: SSI1 | Glycogen/starch synthases,
           ADP-glucose type | chr5:8266934-8270860 FORWARD
           LENGTH=652
          Length = 652

 Score =  228 bits (580), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 111/147 (75%), Positives = 124/147 (84%)

Query: 1   MEYDVQFVMLGSGSSIYEDWMRAAESSYRDKFRGWVGFNVPVSHRITAGCDILLMPSIFE 60
           M  D+QFVMLGSG   YE WMR+ E +YRDKFRGWVGFNVP+SHRITAGCDILLMPS FE
Sbjct: 484 MVDDIQFVMLGSGDPKYESWMRSMEETYRDKFRGWVGFNVPISHRITAGCDILLMPSRFE 543

Query: 61  PCGLNQLYAMRYGTIPVVHETGGLRDTVQSFNPFAEGGNAEGTGWTFSPLSKESMLVGLR 120
           PCGLNQLYAMRYGTIPVVH TGGLRDTV++FNP+AEGG   GTGW F+PLSK+SM+  LR
Sbjct: 544 PCGLNQLYAMRYGTIPVVHGTGGLRDTVENFNPYAEGGAGTGTGWVFTPLSKDSMVSALR 603

Query: 121 HAIKTYTEYKSCWEGLMKRGMNRDYTW 147
            A  TY EYK  WEGLM+RGM R+Y+W
Sbjct: 604 LAAATYREYKQSWEGLMRRGMTRNYSW 630


>AT5G24300.1 | Symbols: SSI1, SSI, ATSS1 | Glycogen/starch
           synthases, ADP-glucose type | chr5:8266934-8270860
           FORWARD LENGTH=652
          Length = 652

 Score =  228 bits (580), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 111/147 (75%), Positives = 124/147 (84%)

Query: 1   MEYDVQFVMLGSGSSIYEDWMRAAESSYRDKFRGWVGFNVPVSHRITAGCDILLMPSIFE 60
           M  D+QFVMLGSG   YE WMR+ E +YRDKFRGWVGFNVP+SHRITAGCDILLMPS FE
Sbjct: 484 MVDDIQFVMLGSGDPKYESWMRSMEETYRDKFRGWVGFNVPISHRITAGCDILLMPSRFE 543

Query: 61  PCGLNQLYAMRYGTIPVVHETGGLRDTVQSFNPFAEGGNAEGTGWTFSPLSKESMLVGLR 120
           PCGLNQLYAMRYGTIPVVH TGGLRDTV++FNP+AEGG   GTGW F+PLSK+SM+  LR
Sbjct: 544 PCGLNQLYAMRYGTIPVVHGTGGLRDTVENFNPYAEGGAGTGTGWVFTPLSKDSMVSALR 603

Query: 121 HAIKTYTEYKSCWEGLMKRGMNRDYTW 147
            A  TY EYK  WEGLM+RGM R+Y+W
Sbjct: 604 LAAATYREYKQSWEGLMRRGMTRNYSW 630


>AT3G01180.1 | Symbols: AtSS2, SS2 | starch synthase 2 |
           chr3:62456-65678 REVERSE LENGTH=792
          Length = 792

 Score =  184 bits (466), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 87/147 (59%), Positives = 102/147 (69%), Gaps = 4/147 (2%)

Query: 1   MEYDVQFVMLGSGSSIYEDWMRAAESSYRDKFRGWVGFNVPVSHRITAGCDILLMPSIFE 60
           M  DVQ VMLG+G    E+ +R  E  YRDK RGWVGF+V  +HRITAG DILLMPS FE
Sbjct: 632 MSQDVQLVMLGTGRPDLEEVLRQMEHQYRDKARGWVGFSVKTAHRITAGADILLMPSRFE 691

Query: 61  PCGLNQLYAMRYGTIPVVHETGGLRDTVQSFNPFAEGGNAEGTGWTFSPLSKESMLVGLR 120
           PCGLNQLYAM YGTIPVVH  GGLRDTVQ F+P++E     G GWTF       ++  L 
Sbjct: 692 PCGLNQLYAMNYGTIPVVHAVGGLRDTVQQFDPYSE----TGLGWTFDSAEAGKLIHALG 747

Query: 121 HAIKTYTEYKSCWEGLMKRGMNRDYTW 147
           + + TY EYK  WEGL +RGM +D +W
Sbjct: 748 NCLLTYREYKESWEGLQRRGMTQDLSW 774


>AT1G32900.1 | Symbols:  | UDP-Glycosyltransferase superfamily
           protein | chr1:11920582-11923506 REVERSE LENGTH=610
          Length = 610

 Score =  100 bits (249), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 55/147 (37%), Positives = 79/147 (53%), Gaps = 2/147 (1%)

Query: 1   MEYDVQFVMLGSGSSIYEDWMRAAESSYRDKFRGWVGFNVPVSHRITAGCDILLMPSIFE 60
           M  +VQ V+LG+G    E  +   E  +  K  G   FNVP++H ITAG D +++PS FE
Sbjct: 427 MGLNVQMVILGTGKKKMEAQILELEEKFPGKAVGVAKFNVPLAHMITAGADFIIVPSRFE 486

Query: 61  PCGLNQLYAMRYGTIPVVHETGGLRDTVQSFNPFAEGGNAEGTGWTFSPLSKESMLVGLR 120
           PCGL QL+AMRYGT+P+V  TGGL DTV+        G          P    +    + 
Sbjct: 487 PCGLIQLHAMRYGTVPIVASTGGLVDTVKDGYTGFHIGRFNVKCEVVDPDDVIATAKAVT 546

Query: 121 HAIKTYTEYKSCWEGLMKRGMNRDYTW 147
            A+  Y    S  + ++K  M++D++W
Sbjct: 547 RAVAVYG--TSAMQEMVKNCMDQDFSW 571


>AT1G11720.2 | Symbols: SS3 | starch synthase 3 | chr1:3951597-3956840
            FORWARD LENGTH=1094
          Length = 1094

 Score =  100 bits (248), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/155 (38%), Positives = 86/155 (55%), Gaps = 8/155 (5%)

Query: 1    MEYDVQFVMLGSGSS--IYEDWMRAA---ESSYRDKFRGWVGFNVPVSHRITAGCDILLM 55
            +E + Q V+LGS     I  D++  A    SS+ D+ R  + ++ P+SH I AG D +L+
Sbjct: 924  LERNGQVVLLGSAPDPRIQNDFVNLANQLHSSHGDRARLVLTYDEPLSHLIYAGADFILV 983

Query: 56   PSIFEPCGLNQLYAMRYGTIPVVHETGGLRDTVQSFNPFAEGGNA---EGTGWTFSPLSK 112
            PSIFEPCGL QL AMRYG +PVV +TGGL DTV   +   E   A   E  G++F     
Sbjct: 984  PSIFEPCGLTQLIAMRYGAVPVVRKTGGLFDTVFDVDHDKERAQAQVLEPNGFSFDGADA 1043

Query: 113  ESMLVGLRHAIKTYTEYKSCWEGLMKRGMNRDYTW 147
              +   L  AI  + + +  +  L K  M +D++W
Sbjct: 1044 PGVDYALNRAISAWYDGREWFNSLCKTVMEQDWSW 1078


>AT1G11720.1 | Symbols: ATSS3, SS3 | starch synthase 3 |
            chr1:3952460-3956840 FORWARD LENGTH=1042
          Length = 1042

 Score =  100 bits (248), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 60/155 (38%), Positives = 86/155 (55%), Gaps = 8/155 (5%)

Query: 1    MEYDVQFVMLGSGSS--IYEDWMRAA---ESSYRDKFRGWVGFNVPVSHRITAGCDILLM 55
            +E + Q V+LGS     I  D++  A    SS+ D+ R  + ++ P+SH I AG D +L+
Sbjct: 872  LERNGQVVLLGSAPDPRIQNDFVNLANQLHSSHGDRARLVLTYDEPLSHLIYAGADFILV 931

Query: 56   PSIFEPCGLNQLYAMRYGTIPVVHETGGLRDTVQSFNPFAEGGNA---EGTGWTFSPLSK 112
            PSIFEPCGL QL AMRYG +PVV +TGGL DTV   +   E   A   E  G++F     
Sbjct: 932  PSIFEPCGLTQLIAMRYGAVPVVRKTGGLFDTVFDVDHDKERAQAQVLEPNGFSFDGADA 991

Query: 113  ESMLVGLRHAIKTYTEYKSCWEGLMKRGMNRDYTW 147
              +   L  AI  + + +  +  L K  M +D++W
Sbjct: 992  PGVDYALNRAISAWYDGREWFNSLCKTVMEQDWSW 1026


>AT4G18240.1 | Symbols: ATSS4, SSIV, SS4 | starch synthase 4 |
            chr4:10082221-10087044 FORWARD LENGTH=1040
          Length = 1040

 Score = 88.6 bits (218), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/150 (32%), Positives = 80/150 (53%), Gaps = 4/150 (2%)

Query: 1    MEYDVQFVMLGSGSSIY-EDWMRAAESSYR--DKFRGWVGFNVPVSHRITAGCDILLMPS 57
            +E   QFV+LGS    + +      E  ++  D  R  + ++  +SH I A  D+ ++PS
Sbjct: 867  LELGGQFVLLGSSPVPHIQREFEGIEQQFKSHDHVRLLLKYDEALSHTIYAASDLFIIPS 926

Query: 58   IFEPCGLNQLYAMRYGTIPVVHETGGLRDTVQSFNPFAEGGNAEGTGWTFSPLSKESMLV 117
            IFEPCGL Q+ AMRYG+IP+  +TGGL D+V   +        +  G+TF    ++    
Sbjct: 927  IFEPCGLTQMIAMRYGSIPIARKTGGLNDSVFDIDDDTIPTQFQ-NGFTFQTADEQGFNY 985

Query: 118  GLRHAIKTYTEYKSCWEGLMKRGMNRDYTW 147
             L  A   Y + +  W  L+++ M+ D++W
Sbjct: 986  ALERAFNHYKKDEEKWMRLVEKVMSIDFSW 1015