Miyakogusa Predicted Gene
- Lj1g3v0948600.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v0948600.1 Non Chatacterized Hit- tr|I1JJU8|I1JJU8_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,90.22,0,SUBFAMILY NOT
NAMED,NULL; CHLOROPHYLL A/B BINDING PROTEIN,Chlorophyll A-B binding
protein, plant; Ch,CUFF.26597.1
(276 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G61520.3 | Symbols: LHCA3 | photosystem I light harvesting co... 436 e-123
AT1G61520.1 | Symbols: LHCA3 | photosystem I light harvesting co... 436 e-123
AT1G61520.2 | Symbols: LHCA3 | photosystem I light harvesting co... 367 e-102
AT3G61470.1 | Symbols: LHCA2 | photosystem I light harvesting co... 153 1e-37
AT1G19150.1 | Symbols: LHCA6, LHCA2*1 | photosystem I light harv... 150 7e-37
AT1G45474.2 | Symbols: LHCA5 | photosystem I light harvesting co... 149 2e-36
AT1G45474.1 | Symbols: LHCA5 | photosystem I light harvesting co... 149 2e-36
AT3G47470.1 | Symbols: LHCA4, CAB4 | light-harvesting chlorophyl... 142 2e-34
AT3G27690.1 | Symbols: LHCB2.4, LHCB2.3, LHCB2 | photosystem II ... 118 5e-27
AT2G05100.1 | Symbols: LHCB2.1, LHCB2 | photosystem II light har... 116 2e-26
AT2G05070.1 | Symbols: LHCB2.2, LHCB2 | photosystem II light har... 116 2e-26
AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyl... 115 4e-26
AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | chlorophyll A/B-bi... 114 5e-26
AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | chlorophyll A/B bi... 114 5e-26
AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | light-harvesting chloro... 112 2e-25
AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | photosystem II light ha... 112 3e-25
AT3G54890.1 | Symbols: LHCA1 | photosystem I light harvesting co... 110 1e-24
AT5G54270.1 | Symbols: LHCB3, LHCB3*1 | light-harvesting chlorop... 109 2e-24
AT4G10340.1 | Symbols: LHCB5 | light harvesting complex of photo... 104 7e-23
AT1G76570.1 | Symbols: | Chlorophyll A-B binding family protein... 97 9e-21
AT3G08940.2 | Symbols: LHCB4.2 | light harvesting complex photos... 87 1e-17
AT5G01530.1 | Symbols: LHCB4.1 | light harvesting complex photos... 82 3e-16
AT3G54890.4 | Symbols: LHCA1 | photosystem I light harvesting co... 75 5e-14
AT1G15820.1 | Symbols: LHCB6, CP24 | light harvesting complex ph... 74 9e-14
AT3G54890.2 | Symbols: LHCA1 | photosystem I light harvesting co... 74 2e-13
AT2G40100.1 | Symbols: LHCB4.3 | light harvesting complex photos... 64 2e-10
AT5G28450.1 | Symbols: | Chlorophyll A-B binding family protein... 62 6e-10
AT3G54890.3 | Symbols: LHCA1 | photosystem I light harvesting co... 54 8e-08
AT3G08940.1 | Symbols: LHCB4.2 | light harvesting complex photos... 52 5e-07
>AT1G61520.3 | Symbols: LHCA3 | photosystem I light harvesting
complex gene 3 | chr1:22700152-22701149 FORWARD
LENGTH=273
Length = 273
Score = 436 bits (1122), Expect = e-123, Method: Compositional matrix adjust.
Identities = 217/257 (84%), Positives = 230/257 (89%), Gaps = 2/257 (0%)
Query: 20 KQSLGARSLQSPIGSSRKGSFIVKAASTPPVKQGANRPLWFASKQSLSYLDGSLPGDFGF 79
+Q G++ + S S +K SF+VKAA+TPPVKQGANRPLWFAS QSLSYLDGSLPGD+GF
Sbjct: 19 RQIFGSKPVAS--ASQKKSSFVVKAAATPPVKQGANRPLWFASSQSLSYLDGSLPGDYGF 76
Query: 80 DPLGLSDPEGTGGFIEPKWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPEETALPWFQ 139
DPLGLSDPEGTGGFIEP+WLAYGEIINGRFAMLGAAGAIAPEILGKAGLIP ETALPWFQ
Sbjct: 77 DPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQ 136
Query: 140 TGVIPPAGTYSYWADSYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSG 199
TGVIPPAGTY+YWAD+YTLFVLEMALMGFAEHRR QDW PGSMGKQYFLGLEKGL GSG
Sbjct: 137 TGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSG 196
Query: 200 DPAYXXXXXXXXXXXXKDEKSMKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLD 259
+PAY KDEKS+KELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLD
Sbjct: 197 NPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLD 256
Query: 260 HLADPVNNNVLTSLKFH 276
HLADPVNNNVLTSLKFH
Sbjct: 257 HLADPVNNNVLTSLKFH 273
>AT1G61520.1 | Symbols: LHCA3 | photosystem I light harvesting
complex gene 3 | chr1:22700152-22701149 FORWARD
LENGTH=273
Length = 273
Score = 436 bits (1122), Expect = e-123, Method: Compositional matrix adjust.
Identities = 217/257 (84%), Positives = 230/257 (89%), Gaps = 2/257 (0%)
Query: 20 KQSLGARSLQSPIGSSRKGSFIVKAASTPPVKQGANRPLWFASKQSLSYLDGSLPGDFGF 79
+Q G++ + S S +K SF+VKAA+TPPVKQGANRPLWFAS QSLSYLDGSLPGD+GF
Sbjct: 19 RQIFGSKPVAS--ASQKKSSFVVKAAATPPVKQGANRPLWFASSQSLSYLDGSLPGDYGF 76
Query: 80 DPLGLSDPEGTGGFIEPKWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPEETALPWFQ 139
DPLGLSDPEGTGGFIEP+WLAYGEIINGRFAMLGAAGAIAPEILGKAGLIP ETALPWFQ
Sbjct: 77 DPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQ 136
Query: 140 TGVIPPAGTYSYWADSYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSG 199
TGVIPPAGTY+YWAD+YTLFVLEMALMGFAEHRR QDW PGSMGKQYFLGLEKGL GSG
Sbjct: 137 TGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSG 196
Query: 200 DPAYXXXXXXXXXXXXKDEKSMKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLD 259
+PAY KDEKS+KELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLD
Sbjct: 197 NPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLD 256
Query: 260 HLADPVNNNVLTSLKFH 276
HLADPVNNNVLTSLKFH
Sbjct: 257 HLADPVNNNVLTSLKFH 273
>AT1G61520.2 | Symbols: LHCA3 | photosystem I light harvesting
complex gene 3 | chr1:22700493-22701149 FORWARD
LENGTH=218
Length = 218
Score = 367 bits (943), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/219 (84%), Positives = 192/219 (87%), Gaps = 5/219 (2%)
Query: 58 LWFASKQSLSYLDGSLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRFAMLGAAGA 117
+W S S S LPGD+GFDPLGLSDPEGTGGFIEP+WLAYGEIINGRFAMLGAAGA
Sbjct: 5 IWRCSDSSCS-----LPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGA 59
Query: 118 IAPEILGKAGLIPEETALPWFQTGVIPPAGTYSYWADSYTLFVLEMALMGFAEHRRFQDW 177
IAPEILGKAGLIP ETALPWFQTGVIPPAGTY+YWAD+YTLFVLEMALMGFAEHRR QDW
Sbjct: 60 IAPEILGKAGLIPAETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDW 119
Query: 178 AKPGSMGKQYFLGLEKGLGGSGDPAYXXXXXXXXXXXXKDEKSMKELKLKEVKNGRLAML 237
PGSMGKQYFLGLEKGL GSG+PAY KDEKS+KELKLKEVKNGRLAML
Sbjct: 120 YNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAML 179
Query: 238 AILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 276
AILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH
Sbjct: 180 AILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 218
>AT3G61470.1 | Symbols: LHCA2 | photosystem I light harvesting
complex gene 2 | chr3:22745736-22747032 FORWARD
LENGTH=257
Length = 257
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/246 (39%), Positives = 126/246 (51%), Gaps = 49/246 (19%)
Query: 45 ASTPPVKQGANRPLWFASKQSLSYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGE 103
AS V +RP+WF +LDGSLPGDFGFDPLGLS DP+ KW E
Sbjct: 41 ASVRAVAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSL------KWNVQAE 94
Query: 104 IINGRFAMLGAAGAIAPEILGKAGLIPEETALPWFQTGVIPPAGTYSYWADSYTLFVLEM 163
I++ R+AMLGAAG PE L K G++ + W+ AG Y+ D TLFV+E+
Sbjct: 95 IVHCRWAMLGAAGIFIPEFLTKIGILNTPS---WYT------AGEQEYFTDKTTLFVVEL 145
Query: 164 ALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLG----------------GSGDPAYXXXX 207
L+G+AE RR+ D KPGS+ K G GSG PA
Sbjct: 146 ILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPA----- 200
Query: 208 XXXXXXXXKDEKSMKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNN 267
+KEL+ KE+KNGRLAMLA++G + Q + TG GP NL HLADP +
Sbjct: 201 ------------KLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHA 248
Query: 268 NVLTSL 273
+ +
Sbjct: 249 TIFAAF 254
>AT1G19150.1 | Symbols: LHCA6, LHCA2*1 | photosystem I light
harvesting complex gene 6 | chr1:6612806-6613799 FORWARD
LENGTH=270
Length = 270
Score = 150 bits (380), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 99/257 (38%), Positives = 130/257 (50%), Gaps = 23/257 (8%)
Query: 22 SLGARSLQSPIGSSRKGSFIVKAASTPPVKQGANRPLWFASKQSLSYLDGSLPGDFGFDP 81
S G R ++ + R G + P +RPLWF +LDGSLPGDFGFDP
Sbjct: 35 STGGRLMRERLVVVRAGKEVSSVCEPLP----PDRPLWFPGSSPPEWLDGSLPGDFGFDP 90
Query: 82 LGL-SDPEGTGGFIEPKWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPEETALPWFQT 140
LGL SDP+ KW A E+I+ R+AML G I PE L + G I W+
Sbjct: 91 LGLGSDPDTL------KWFAQAELIHSRWAMLAVTGIIIPECLERLGFI---ENFSWYD- 140
Query: 141 GVIPPAGTYSYWADSYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGD 200
AG+ Y+ADS TLFV +M LMG+AE RR+ D KPGS+ + + D
Sbjct: 141 -----AGSREYFADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIE--PKYPHKVNPKPD 193
Query: 201 PAYXXXXXXXXXXXXK-DEKSMKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLD 259
Y + + + L+ KE+KNGRLAMLA LG+ Q T P +NL+
Sbjct: 194 VGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQATYTSQDPIENLMA 253
Query: 260 HLADPVNNNVLTSLKFH 276
HLADP + NV ++ H
Sbjct: 254 HLADPGHCNVFSAFTSH 270
>AT1G45474.2 | Symbols: LHCA5 | photosystem I light harvesting
complex gene 5 | chr1:17179353-17180439 FORWARD
LENGTH=256
Length = 256
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/258 (38%), Positives = 140/258 (54%), Gaps = 27/258 (10%)
Query: 23 LGARSLQSPIGSSRKGSFIVKAAS---TPPVKQGANRPLWFASKQSLSYLDGSLPGDFGF 79
L R S + + R S VKAA P V R W YLDG+L GD+GF
Sbjct: 14 LHHRRDASSVITRRISS--VKAAGGGINPTV--AVERATWLPGLNPPPYLDGNLAGDYGF 69
Query: 80 DPLGL-SDPEGTGGFIEPKWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPEETALP-W 137
DPLGL DPE KW E+++ RFAMLG AG + ++L G+ LP W
Sbjct: 70 DPLGLGEDPESL------KWYVQAELVHSRFAMLGVAGILFTDLLRTTGI----RNLPVW 119
Query: 138 FQTGVIPPAGTYSYWADSYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQ--YFLGLEKGL 195
++ G + + + A + TL V++ LMGFAE +R+ D+ PGS K+ +F GLE L
Sbjct: 120 YEAGAV----KFDF-ASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEAAL 174
Query: 196 GGSGDPAYXXXXXXXXXXXXKDEKSMKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQ 255
G +P Y KD ++ + KLKE+KNGRLAM+A+LG+F+Q VT GP
Sbjct: 175 EGL-EPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPID 233
Query: 256 NLLDHLADPVNNNVLTSL 273
NL++HL++P + ++ +L
Sbjct: 234 NLVEHLSNPWHKTIIQTL 251
>AT1G45474.1 | Symbols: LHCA5 | photosystem I light harvesting
complex gene 5 | chr1:17179353-17180439 FORWARD
LENGTH=256
Length = 256
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/258 (38%), Positives = 140/258 (54%), Gaps = 27/258 (10%)
Query: 23 LGARSLQSPIGSSRKGSFIVKAAS---TPPVKQGANRPLWFASKQSLSYLDGSLPGDFGF 79
L R S + + R S VKAA P V R W YLDG+L GD+GF
Sbjct: 14 LHHRRDASSVITRRISS--VKAAGGGINPTV--AVERATWLPGLNPPPYLDGNLAGDYGF 69
Query: 80 DPLGL-SDPEGTGGFIEPKWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPEETALP-W 137
DPLGL DPE KW E+++ RFAMLG AG + ++L G+ LP W
Sbjct: 70 DPLGLGEDPESL------KWYVQAELVHSRFAMLGVAGILFTDLLRTTGI----RNLPVW 119
Query: 138 FQTGVIPPAGTYSYWADSYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQ--YFLGLEKGL 195
++ G + + + A + TL V++ LMGFAE +R+ D+ PGS K+ +F GLE L
Sbjct: 120 YEAGAV----KFDF-ASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEAAL 174
Query: 196 GGSGDPAYXXXXXXXXXXXXKDEKSMKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQ 255
G +P Y KD ++ + KLKE+KNGRLAM+A+LG+F+Q VT GP
Sbjct: 175 EGL-EPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPID 233
Query: 256 NLLDHLADPVNNNVLTSL 273
NL++HL++P + ++ +L
Sbjct: 234 NLVEHLSNPWHKTIIQTL 251
>AT3G47470.1 | Symbols: LHCA4, CAB4 | light-harvesting
chlorophyll-protein complex I subunit A4 |
chr3:17493622-17494773 REVERSE LENGTH=251
Length = 251
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/246 (40%), Positives = 128/246 (52%), Gaps = 45/246 (18%)
Query: 41 IVKAASTPPVKQGANRPLWFASKQSLSYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPKWL 99
I +A T K A + W S YL GSL GD GFDPLGL+ DPE KW
Sbjct: 39 IGSSAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENL------KWF 92
Query: 100 AYGEIINGRFAMLGAAGAIAPEILGKAGLI--PEETALPWFQTGVIPPAGTYSYWADSYT 157
E++NGR+AMLG AG + PE+ K G+I PE W+ AG Y+A S T
Sbjct: 93 VQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPE-----WYD------AGKEQYFASSST 141
Query: 158 LFVLEMALMGFAEHRRFQDWAKPGSMG-----KQYFLGLEKGL----GGSGDPAYXXXXX 208
LFV+E L + E RR+QD PGS+ KQY L KG GG +P
Sbjct: 142 LFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQY--SLPKGEVGYPGGIFNPL------ 193
Query: 209 XXXXXXXKDEKSMKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNN 268
+ +E K KE+ NGRLAMLA LG+ +Q VTG GP++NLL HL+DP +N
Sbjct: 194 --------NFAPTQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNT 245
Query: 269 VLTSLK 274
++ +
Sbjct: 246 IVQTFN 251
>AT3G27690.1 | Symbols: LHCB2.4, LHCB2.3, LHCB2 | photosystem II
light harvesting complex gene 2.3 |
chr3:10256002-10256921 FORWARD LENGTH=266
Length = 266
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 97/261 (37%), Positives = 135/261 (51%), Gaps = 43/261 (16%)
Query: 25 ARSLQSPIGSSRKGSFIV---KAASTP-PVKQGANRPLWFA--SKQSLSYLDGSLPGDFG 78
+ L IG+S G I+ STP + G +RP + S+ + SYL G PGD+G
Sbjct: 20 SNDLLRKIGASNGGGRIIMRRTVKSTPQSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYG 79
Query: 79 FDPLGLS-DPEGTGGFIEPKWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPEETALPW 137
+D GLS DPE F + + L E+I+ R+AMLGA G PEIL K G+ E W
Sbjct: 80 WDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCTFPEILSKNGVKFGEAV--W 131
Query: 138 FQTGV-IPPAGTYSYWADS--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYF 188
F+ G I G Y + ++ ++ LMGF E R G +G+
Sbjct: 132 FKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFIEGYRIGG----GPLGE--- 184
Query: 189 LGLEKGL-GGSGDPAYXXXXXXXXXXXXKDEKSMKELKLKEVKNGRLAMLAILGYFIQGL 247
GL+ GG+ DP +D ++ ELK+KE+KNGRLAM ++ G+F+Q +
Sbjct: 185 -GLDPLYPGGAFDP----------LNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAI 233
Query: 248 VTGVGPYQNLLDHLADPVNNN 268
VTG GP +NL DH+ADPV NN
Sbjct: 234 VTGKGPIENLFDHIADPVANN 254
>AT2G05100.1 | Symbols: LHCB2.1, LHCB2 | photosystem II light
harvesting complex gene 2.1 | chr2:1823449-1824331
REVERSE LENGTH=265
Length = 265
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 96/260 (36%), Positives = 135/260 (51%), Gaps = 42/260 (16%)
Query: 25 ARSLQSPIGSSRKGSFIVK--AASTP-PVKQGANRPLWFA--SKQSLSYLDGSLPGDFGF 79
+ L +G S G ++ STP + G +RP + S+ + SYL G PGD+G+
Sbjct: 20 SNELLRKVGVSGGGRVTMRRTVKSTPQSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGW 79
Query: 80 DPLGLS-DPEGTGGFIEPKWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPEETALPWF 138
D GLS DPE F + + L E+I+ R+AMLGA G PEIL K G+ E WF
Sbjct: 80 DTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCTFPEILSKNGVKFGEAV--WF 131
Query: 139 QTGV-IPPAGTYSYWADS--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFL 189
+ G I G Y + ++ +++ LMGF E R G +G+
Sbjct: 132 KAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGG----GPLGE---- 183
Query: 190 GLEKGL-GGSGDPAYXXXXXXXXXXXXKDEKSMKELKLKEVKNGRLAMLAILGYFIQGLV 248
GL+ GG+ DP +D ++ ELK+KE+KNGRLAM ++ G+F+Q +V
Sbjct: 184 GLDPLYPGGAFDP----------LNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIV 233
Query: 249 TGVGPYQNLLDHLADPVNNN 268
TG GP +NL DHLADPV NN
Sbjct: 234 TGKGPIENLFDHLADPVANN 253
>AT2G05070.1 | Symbols: LHCB2.2, LHCB2 | photosystem II light
harvesting complex gene 2.2 | chr2:1799436-1800329
REVERSE LENGTH=265
Length = 265
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/237 (38%), Positives = 127/237 (53%), Gaps = 40/237 (16%)
Query: 46 STP-PVKQGANRPLWFA--SKQSLSYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPKWLAY 101
STP + G +RP + S+ + SYL G PGD+G+D GLS DPE F + + L
Sbjct: 43 STPQSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPET---FAKNREL-- 97
Query: 102 GEIINGRFAMLGAAGAIAPEILGKAGLIPEETALPWFQTGV-IPPAGTYSYWADS----- 155
E+I+ R+AMLGA G PEIL K G+ E WF+ G I G Y +
Sbjct: 98 -EVIHSRWAMLGALGCTFPEILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHA 154
Query: 156 ---YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGL-GGSGDPAYXXXXXXXX 211
++ +++ LMGF E R G +G+ GL+ GG+ DP
Sbjct: 155 QSILAIWAVQVVLMGFIEGYRIGG----GPLGE----GLDPLYPGGAFDP---------- 196
Query: 212 XXXXKDEKSMKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNN 268
+D ++ ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NL DHLADPV NN
Sbjct: 197 LNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANN 253
>AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll
A/B binding protein 1 | chr1:10478071-10478874 FORWARD
LENGTH=267
Length = 267
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 95/259 (36%), Positives = 127/259 (49%), Gaps = 44/259 (16%)
Query: 30 SPIGSSRKGSFIVKAASTPPVKQGANRPLWFASK----------QSLSYLDGSLPGDFGF 79
SP S GS V T +G + W+ S +S SYL G PGD+G+
Sbjct: 21 SPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGW 80
Query: 80 DPLGLS-DPEGTGGFIEPKWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPEETALPWF 138
D GLS DPE F + L E+I+ R+AMLGA G + PE+L + G+ E WF
Sbjct: 81 DTAGLSADPET---FARNREL---EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WF 132
Query: 139 QTGV-IPPAGTYSYWADS--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFL 189
+ G I G Y + ++ ++ LMG E R A G +G+ L
Sbjct: 133 KAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV---AGNGPLGEAEDL 189
Query: 190 GLEKGLGGSGDPAYXXXXXXXXXXXXKDEKSMKELKLKEVKNGRLAMLAILGYFIQGLVT 249
GGS DP D ++ ELK+KE+KNGRLAM ++ G+F+Q +VT
Sbjct: 190 LYP---GGSFDP----------LGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVT 236
Query: 250 GVGPYQNLLDHLADPVNNN 268
G GP +NL DHLADPVNNN
Sbjct: 237 GKGPIENLADHLADPVNNN 255
>AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | chlorophyll
A/B-binding protein 2 | chr1:10475089-10475892 REVERSE
LENGTH=267
Length = 267
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 95/259 (36%), Positives = 127/259 (49%), Gaps = 44/259 (16%)
Query: 30 SPIGSSRKGSFIVKAASTPPVKQGANRPLWFASK----------QSLSYLDGSLPGDFGF 79
SP S GS V T +G + W+ S +S SYL G PGD+G+
Sbjct: 21 SPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGW 80
Query: 80 DPLGLS-DPEGTGGFIEPKWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPEETALPWF 138
D GLS DPE F + L E+I+ R+AMLGA G + PE+L + G+ E WF
Sbjct: 81 DTAGLSADPET---FARNREL---EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WF 132
Query: 139 QTGV-IPPAGTYSYWADS--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFL 189
+ G I G Y + ++ ++ LMG E R A G +G+ L
Sbjct: 133 KAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV---AGNGPLGEAEDL 189
Query: 190 GLEKGLGGSGDPAYXXXXXXXXXXXXKDEKSMKELKLKEVKNGRLAMLAILGYFIQGLVT 249
GGS DP D ++ ELK+KE+KNGRLAM ++ G+F+Q +VT
Sbjct: 190 LYP---GGSFDP----------LGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVT 236
Query: 250 GVGPYQNLLDHLADPVNNN 268
G GP +NL DHLADPVNNN
Sbjct: 237 GKGPIENLADHLADPVNNN 255
>AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | chlorophyll A/B
binding protein 3 | chr1:10472443-10473246 REVERSE
LENGTH=267
Length = 267
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 95/259 (36%), Positives = 127/259 (49%), Gaps = 44/259 (16%)
Query: 30 SPIGSSRKGSFIVKAASTPPVKQGANRPLWFASK----------QSLSYLDGSLPGDFGF 79
SP S GS V T +G + W+ S +S SYL G PGD+G+
Sbjct: 21 SPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGW 80
Query: 80 DPLGLS-DPEGTGGFIEPKWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPEETALPWF 138
D GLS DPE F + L E+I+ R+AMLGA G + PE+L + G+ E WF
Sbjct: 81 DTAGLSADPET---FARNREL---EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WF 132
Query: 139 QTGV-IPPAGTYSYWADS--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFL 189
+ G I G Y + ++ ++ LMG E R A G +G+ L
Sbjct: 133 KAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV---AGNGPLGEAEDL 189
Query: 190 GLEKGLGGSGDPAYXXXXXXXXXXXXKDEKSMKELKLKEVKNGRLAMLAILGYFIQGLVT 249
GGS DP D ++ ELK+KE+KNGRLAM ++ G+F+Q +VT
Sbjct: 190 LYP---GGSFDP----------LGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVT 236
Query: 250 GVGPYQNLLDHLADPVNNN 268
G GP +NL DHLADPVNNN
Sbjct: 237 GKGPIENLADHLADPVNNN 255
>AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | light-harvesting
chlorophyll-protein complex II subunit B1 |
chr2:14524818-14525618 FORWARD LENGTH=266
Length = 266
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/213 (39%), Positives = 112/213 (52%), Gaps = 34/213 (15%)
Query: 67 SYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRFAMLGAAGAIAPEILGK 125
SYL G PGD+G+D GLS DPE F + L E+I+ R+AMLGA G + PE+L +
Sbjct: 67 SYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRWAMLGALGCVFPELLAR 120
Query: 126 AGLIPEETALPWFQTGV-IPPAGTYSYWADS--------YTLFVLEMALMGFAEHRRFQD 176
G+ E WF+ G I G Y + ++ ++ LMG E R
Sbjct: 121 NGVKFGEAV--WFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV-- 176
Query: 177 WAKPGSMGKQYFLGLEKGLGGSGDPAYXXXXXXXXXXXXKDEKSMKELKLKEVKNGRLAM 236
A G +G+ L GGS DP D ++ ELK+KE+KNGRLAM
Sbjct: 177 -AGDGPLGEAEDLLYP---GGSFDP----------LGLATDPEAFAELKVKELKNGRLAM 222
Query: 237 LAILGYFIQGLVTGVGPYQNLLDHLADPVNNNV 269
++ G+F+Q +VTG GP +NL DHLADPVNNN
Sbjct: 223 FSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 255
>AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | photosystem II light
harvesting complex gene B1B2 | chr2:14522716-14523513
REVERSE LENGTH=265
Length = 265
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/212 (39%), Positives = 112/212 (52%), Gaps = 34/212 (16%)
Query: 67 SYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRFAMLGAAGAIAPEILGK 125
SYL G PGD+G+D GLS DPE F + L E+I+ R+AMLGA G + PE+L +
Sbjct: 66 SYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRWAMLGALGCVFPELLAR 119
Query: 126 AGLIPEETALPWFQTGV-IPPAGTYSYWADS--------YTLFVLEMALMGFAEHRRFQD 176
G+ E WF+ G I G Y + ++ ++ LMG E R
Sbjct: 120 NGVKFGEAV--WFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV-- 175
Query: 177 WAKPGSMGKQYFLGLEKGLGGSGDPAYXXXXXXXXXXXXKDEKSMKELKLKEVKNGRLAM 236
A G +G+ L GGS DP D ++ ELK+KE+KNGRLAM
Sbjct: 176 -AGDGPLGEAEDLLYP---GGSFDP----------LGLATDPEAFAELKVKELKNGRLAM 221
Query: 237 LAILGYFIQGLVTGVGPYQNLLDHLADPVNNN 268
++ G+F+Q +VTG GP +NL DHLADPVNNN
Sbjct: 222 FSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>AT3G54890.1 | Symbols: LHCA1 | photosystem I light harvesting
complex gene 1 | chr3:20339706-20340922 REVERSE
LENGTH=241
Length = 241
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 108/215 (50%), Gaps = 33/215 (15%)
Query: 59 WFASKQSLSYLDGSLPGDFGFDPLGLSD-PEGTGGFIEPKWLAYGEIINGRFAMLGAAGA 117
W + +YLDGS PGDFGFDPLGL + P + E E+I+ R+AML G
Sbjct: 48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKE------SELIHCRWAMLAVPGI 101
Query: 118 IAPEILGKAGLIP--EETALPWFQTGVIPPAGTYSYWADSYTLFVLEMALMGFAEHRRFQ 175
+ PE LG + E ALP Q + G W T+ +E + F EH+R
Sbjct: 102 LVPEALGYGNWVKAQEWAALPGGQATYL---GNPVPWGTLPTILAIEFLAIAFVEHQR-- 156
Query: 176 DWAKPGSMGKQYFLGLEKGLGGSGDPAYXXXXXXXXXXXXKDEKSMKELKLKEVKNGRLA 235
SM K +K GG+ DP KD K ++ELK+KE+KNGRLA
Sbjct: 157 ------SMEKD--PEKKKYPGGAFDP----------LGYSKDPKKLEELKVKEIKNGRLA 198
Query: 236 MLAILGYFI-QGLVTGVGPYQNLLDHLADPVNNNV 269
+LA +G+ + Q G GP +NL HLADP +NN+
Sbjct: 199 LLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233
>AT5G54270.1 | Symbols: LHCB3, LHCB3*1 | light-harvesting
chlorophyll B-binding protein 3 | chr5:22038424-22039383
FORWARD LENGTH=265
Length = 265
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 114/217 (52%), Gaps = 33/217 (15%)
Query: 62 SKQSLSYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRFAMLGAAGAIAP 120
S Q+ SYL G PGD+G+D GLS DPE F + + L E+I+GR+AMLGA G I P
Sbjct: 60 SVQTPSYLTGEFPGDYGWDTAGLSADPEA---FAKNRAL---EVIHGRWAMLGAFGCITP 113
Query: 121 EILGKAGLIPEETALPWFQTGV-IPPAGTYSYWAD------SYTLFVL--EMALMGFAEH 171
E+L K + + + WF+ G I G Y + L VL ++ LMG E
Sbjct: 114 EVLQKWVRVDFKEPV-WFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEG 172
Query: 172 RRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYXXXXXXXXXXXXKDEKSMKELKLKEVKN 231
R GL+ G+G G+ Y D + ELK+KE+KN
Sbjct: 173 FRIN--------------GLD-GVG-EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKN 216
Query: 232 GRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNN 268
GRLAM ++ G+F+Q +VTG GP +NLLDHL +PV NN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 253
>AT4G10340.1 | Symbols: LHCB5 | light harvesting complex of
photosystem II 5 | chr4:6408200-6409496 FORWARD
LENGTH=280
Length = 280
Score = 104 bits (259), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 86/220 (39%), Positives = 115/220 (52%), Gaps = 45/220 (20%)
Query: 67 SYLDGSLPGDFGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRFAMLGAAGAIAPEILGK 125
YL+G + GD+G+DP GL PE K+ A+ E+I+ R+AMLGAAG I PE L K
Sbjct: 83 EYLNGEVAGDYGYDPFGLGKKPENFA-----KYQAF-ELIHARWAMLGAAGFIIPEALNK 136
Query: 126 AGLIPEETALPWFQTGVIPPAG-TYSYWADSYTL-----FVLEMALMGFAEHRR------ 173
G A+ WF+TG + G T +Y+ + + V E+ L+G AE+ R
Sbjct: 137 YGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLD 195
Query: 174 FQDWAKPGSMGKQYFLGLEKGLGGSGDPAYXXXXXXXXXXXXKDEKSMKELKLKEVKNGR 233
F+D PG G DP KD + LK+KE+KNGR
Sbjct: 196 FEDKLHPG---------------GPFDP----------LGLAKDPEQGALLKVKEIKNGR 230
Query: 234 LAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSL 273
LAM A+LG+FIQ VTG GP +NL HL+DP NN+LT +
Sbjct: 231 LAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVI 270
>AT1G76570.1 | Symbols: | Chlorophyll A-B binding family protein |
chr1:28729132-28730754 FORWARD LENGTH=327
Length = 327
Score = 97.4 bits (241), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 115/240 (47%), Gaps = 39/240 (16%)
Query: 53 GANRPLWFAS--KQSLSYLDGSLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRFA 110
G RP WF YL G LPGD+GFD GL G K+ + EI++ R+A
Sbjct: 108 GKERPRWFGPIPYDYPPYLTGELPGDYGFDIAGL----GKDRLTFDKYFNF-EILHARWA 162
Query: 111 MLGAAGAIAPEILGKAGLIPEETALP-WFQTGVIPPAG-TYSYW-------ADSYTLFVL 161
ML A GA+ PE+ G A P W++ G G T Y A S + V+
Sbjct: 163 MLAALGALIPEVFDLTGTF--HFAEPVWWRVGYSKLQGETLEYLGIPGLHVAGSQGVIVI 220
Query: 162 EMA---LMGFAEHRRFQDWAKPGSMGKQYFLGLEK----GLGGSGDPAYXXXXXXXXXXX 214
+ LM E+ R + G+E G+ GD Y
Sbjct: 221 AICQVLLMVGPEYAR--------------YCGIEALEPLGIYLPGDINYPGGTLFDPLNL 266
Query: 215 XKDEKSMKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 274
+D + ++LK+KE+KNGRLAM+A LG++ Q TG GP QNL+DH++DP++NN++ L+
Sbjct: 267 SEDPVAFEDLKVKEIKNGRLAMVAWLGFYAQAAFTGKGPVQNLVDHVSDPLHNNLIAMLQ 326
>AT3G08940.2 | Symbols: LHCB4.2 | light harvesting complex
photosystem II | chr3:2717717-2718665 FORWARD LENGTH=287
Length = 287
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 109/265 (41%), Gaps = 75/265 (28%)
Query: 54 ANRPLWFASKQSLSYLDGSLPGDFGFDPLGLSDPEGTGGF-------------------- 93
++RPLWF +S YLDGSL GD+GFDP GL P F
Sbjct: 50 SDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGT 109
Query: 94 ----IEPKWLAY--------------GEIINGRFAMLGAAGAIAPEILGKAGLIPEETAL 135
++PK + E+I+GR+AML GAI E L T +
Sbjct: 110 RTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWL---------TGV 160
Query: 136 PWFQTGVIPPAGTYSYWADSY-----TLFVLEMALMGFAEHRRFQDWAKPGSM--GKQYF 188
W G + SY TL +E+ ++G+ E +R + + G ++F
Sbjct: 161 TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFF 220
Query: 189 LGLEKGLGGSGDPAYXXXXXXXXXXXXKDEKSMKELKLKEVKNGRLAMLAILGYFIQGLV 248
LG + DP +L+L E+K+ RLAM+ LG+ +Q
Sbjct: 221 ----DPLGLASDPV-----------------KKAQLQLAEIKHARLAMVGFLGFAVQAAA 259
Query: 249 TGVGPYQNLLDHLADPVNNNVLTSL 273
TG GP N HL+DP++ ++ +
Sbjct: 260 TGKGPLNNWATHLSDPLHTTIIDTF 284
>AT5G01530.1 | Symbols: LHCB4.1 | light harvesting complex
photosystem II | chr5:209084-210243 FORWARD LENGTH=290
Length = 290
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 111/266 (41%), Gaps = 75/266 (28%)
Query: 54 ANRPLWFASKQSLSYLDGSLPGDFGFDPLGLSDPEGTGGF-------------------- 93
+RPLW+ S +LDGSL GD+GFDP GL P F
Sbjct: 53 TDRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGT 112
Query: 94 -----------IEPKWLAYG-------EIINGRFAMLGAAGAIAPEILGKAGLIPEETAL 135
+P +G E+I+GR+AML GA++ E L T +
Sbjct: 113 RTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWL---------TGV 163
Query: 136 PWFQTGVIPPAGTYSYWADSY-----TLFVLEMALMGFAEHRRFQDWAKPGSM--GKQYF 188
W G + SY TL +E+ ++G+ E +R + + G ++F
Sbjct: 164 TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFF 223
Query: 189 LGLEKGLGGSGDPAYXXXXXXXXXXXXKDEKSMKELKLKEVKNGRLAMLAILGYFIQGLV 248
LG + DP EK+ +L+L E+K+ RLAM+A LG+ +Q
Sbjct: 224 ----DPLGLAADP----------------EKT-AQLQLAEIKHARLAMVAFLGFAVQAAA 262
Query: 249 TGVGPYQNLLDHLADPVNNNVLTSLK 274
TG GP N HL+DP++ ++ +
Sbjct: 263 TGKGPLNNWATHLSDPLHTTIIDTFS 288
>AT3G54890.4 | Symbols: LHCA1 | photosystem I light harvesting
complex gene 1 | chr3:20339881-20340922 REVERSE
LENGTH=213
Length = 213
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 83/178 (46%), Gaps = 32/178 (17%)
Query: 59 WFASKQSLSYLDGSLPGDFGFDPLGLSD-PEGTGGFIEPKWLAYGEIINGRFAMLGAAGA 117
W + +YLDGS PGDFGFDPLGL + P + E E+I+ R+AML G
Sbjct: 48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKE------SELIHCRWAMLAVPGI 101
Query: 118 IAPEILGKAGLIP--EETALPWFQTGVIPPAGTYSYWADSYTLFVLEMALMGFAEHRRFQ 175
+ PE LG + E ALP Q + G W T+ +E + F EH+R
Sbjct: 102 LVPEALGYGNWVKAQEWAALPGGQATYL---GNPVPWGTLPTILAIEFLAIAFVEHQR-- 156
Query: 176 DWAKPGSMGKQYFLGLEKGLGGSGDPAYXXXXXXXXXXXXKDEKSMKELKLKEVKNGR 233
SM K +K GG+ DP KD K ++ELK+KE+KNG+
Sbjct: 157 ------SMEKD--PEKKKYPGGAFDP----------LGYSKDPKKLEELKVKEIKNGK 196
>AT1G15820.1 | Symbols: LHCB6, CP24 | light harvesting complex
photosystem II subunit 6 | chr1:5446685-5447676 REVERSE
LENGTH=258
Length = 258
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 80/251 (31%), Positives = 115/251 (45%), Gaps = 58/251 (23%)
Query: 24 GARSLQSPIGSSR----KGSFIVKAAST-------PPVKQGAN--RPLWFASKQSLSYLD 70
GA +L S +G+ + + IV AA+ P VK G N P W LD
Sbjct: 24 GATALASGVGTGAQRVGRKTLIVAAAAAQPKKSWIPAVKGGGNFLDPEW---------LD 74
Query: 71 GSLPGDFGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRFAMLGAAGAIAPEILGKAGLI 129
GSLPGDFGFDPLGL DP F+ KW E+I+GR+AM A+ +G+A
Sbjct: 75 GSLPGDFGFDPLGLGKDP----AFL--KWYREAELIHGRWAM----AAVLGIFVGQA--- 121
Query: 130 PEETALPWFQTGVIPPA-GTYSYWADSYTLFVLEMALMGFAEHRRFQD----------WA 178
+ + WF+ G P A +S+ +L ++ LMG+ E +R+ D WA
Sbjct: 122 --WSGVAWFEAGAQPDAIAPFSF----GSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWA 175
Query: 179 KPGSMGKQYFLGLEKGLGGSG----DPAYXXXXXXXXXXXXKDEKSMKELKLKEVKNGRL 234
P S + F G G DP D + ++ LKL E+K+ RL
Sbjct: 176 TPWSKTAENFANYTGDQGYPGGRFFDP-LGLAGKNRDGVYEPDFEKLERLKLAEIKHSRL 234
Query: 235 AMLAILGYFIQ 245
AM+A+L ++ +
Sbjct: 235 AMVAMLIFYFE 245
>AT3G54890.2 | Symbols: LHCA1 | photosystem I light harvesting
complex gene 1 | chr3:20339706-20340922 REVERSE
LENGTH=207
Length = 207
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 87/215 (40%), Gaps = 67/215 (31%)
Query: 59 WFASKQSLSYLDGSLPGDFGFDPLGLSD-PEGTGGFIEPKWLAYGEIINGRFAMLGAAGA 117
W + +YLDGS PGDFGFDPLGL + P + E E+I+ R+AML G
Sbjct: 48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKE------SELIHCRWAMLAVPGI 101
Query: 118 IAPEILGKAGLIP--EETALPWFQTGVIPPAGTYSYWADSYTLFVLEMALMGFAEHRRFQ 175
+ PE LG + E ALP Q + G W T+ +E + F
Sbjct: 102 LVPEALGYGNWVKAQEWAALPGGQATYL---GNPVPWGTLPTILAIEFLAIAF------- 151
Query: 176 DWAKPGSMGKQYFLGLEKGLGGSGDPAYXXXXXXXXXXXXKDEKSMKELKLKEVKNGRLA 235
E +KE +KNGRLA
Sbjct: 152 ------------------------------------------ELKVKE-----IKNGRLA 164
Query: 236 MLAILGYFI-QGLVTGVGPYQNLLDHLADPVNNNV 269
+LA +G+ + Q G GP +NL HLADP +NN+
Sbjct: 165 LLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 199
>AT2G40100.1 | Symbols: LHCB4.3 | light harvesting complex
photosystem II | chr2:16745884-16747190 FORWARD
LENGTH=276
Length = 276
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 99/253 (39%), Gaps = 76/253 (30%)
Query: 50 VKQGANRPLWFASKQSLSYLDGSLPGDFGFDPLGLSDP----------------EGTGGF 93
V+ +R +WF +LDGS+ GD GFDP GL P + G
Sbjct: 50 VQDDGDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGD 109
Query: 94 I---------------EPKWLAYG-------EIINGRFAMLGAAGAIAPEILGKAGLIPE 131
I +P +G E+I+GR+AMLG GAIA E L
Sbjct: 110 IIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEAL-------- 161
Query: 132 ETALPWFQTGVIPPAGTYSYWADSY-----TLFVLEMALMGFAEHRRFQDWAKPGSMGKQ 186
T + W G + SY TL +E+ ++G+ E +R +
Sbjct: 162 -TGIAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSE---------- 210
Query: 187 YFLGLEKGL--GGSGDPAYXXXXXXXXXXXXKDEKSMKELKLKEVKNGRLAMLAILGYFI 244
L EK + GG DP D + + LKL E+K+ RLAM+A L + +
Sbjct: 211 --LDPEKRIYPGGYFDP----------LGLAADPEKLDTLKLAEIKHSRLAMVAFLIFAL 258
Query: 245 QGLVTGVGPYQNL 257
Q TG GP L
Sbjct: 259 QAAFTGKGPVSFL 271
>AT5G28450.1 | Symbols: | Chlorophyll A-B binding family protein |
chr5:10372978-10374190 REVERSE LENGTH=173
Length = 173
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 37/53 (69%)
Query: 221 MKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSL 273
+KEL+ KE+KNGRLAMLA++G + Q + TG GP NL HLADP + + +
Sbjct: 118 IKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 170
>AT3G54890.3 | Symbols: LHCA1 | photosystem I light harvesting
complex gene 1 | chr3:20339961-20340922 REVERSE
LENGTH=164
Length = 164
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 57/119 (47%), Gaps = 13/119 (10%)
Query: 59 WFASKQSLSYLDGSLPGDFGFDPLGLSD-PEGTGGFIEPKWLAYGEIINGRFAMLGAAGA 117
W + +YLDGS PGDFGFDPLGL + P + E E+I+ R+AML G
Sbjct: 48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKE------SELIHCRWAMLAVPGI 101
Query: 118 IAPEILGKAGLIP--EETALPWFQTGVIPPAGTYSYWADSYTLFVLE-MALMGFAEHRR 173
+ PE LG + E ALP Q + G W T+ +E +A + + RR
Sbjct: 102 LVPEALGYGNWVKAQEWAALPGGQATYL---GNPVPWGTLPTILAIEFLAHLTLLDTRR 157
>AT3G08940.1 | Symbols: LHCB4.2 | light harvesting complex
photosystem II | chr3:2717717-2718400 FORWARD LENGTH=227
Length = 227
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 52/130 (40%), Gaps = 47/130 (36%)
Query: 54 ANRPLWFASKQSLSYLDGSLPGDFGFDPLGLSDPEGTGGF-------------------- 93
++RPLWF +S YLDGSL GD+GFDP GL P F
Sbjct: 50 SDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGT 109
Query: 94 ----IEPKWLAY--------------GEIINGRFAMLGAAGAIAPEILGKAGLIPEETAL 135
++PK + E+I+GR+AML GAI E L T +
Sbjct: 110 RTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWL---------TGV 160
Query: 136 PWFQTGVIPP 145
W G + P
Sbjct: 161 TWQDAGKVSP 170