Miyakogusa Predicted Gene

Lj1g3v0948590.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0948590.1 Non Chatacterized Hit- tr|H9VTY4|H9VTY4_PINTA
Uncharacterized protein (Fragment) OS=Pinus taeda
GN=0,69.49,1e-17,Bac_globin,Globin, truncated bacterial-like; no
description,Globin, structural domain,CUFF.26551.1
         (168 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G32690.1 | Symbols: GLB3, ATGLB3 | hemoglobin 3 | chr4:157654...   271   2e-73

>AT4G32690.1 | Symbols: GLB3, ATGLB3 | hemoglobin 3 |
           chr4:15765486-15766862 FORWARD LENGTH=175
          Length = 175

 Score =  271 bits (692), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 131/169 (77%), Positives = 144/169 (85%), Gaps = 6/169 (3%)

Query: 1   MQSLQHKASEWSGVPSDEAFAIDDTNLFLKLGLQTFINLSTNFYNRVYDDDEEWFRSIFA 60
           MQSLQ KAS  SGV   EAFAID++NLF KLGLQTFINLSTNFY RVYDD+EEWF+SIF+
Sbjct: 1   MQSLQDKASVLSGVDQAEAFAIDESNLFDKLGLQTFINLSTNFYTRVYDDEEEWFQSIFS 60

Query: 61  DSEKQNAIQNQYEFFVQRMGGPPLFSQRRGHPALIGRHRPFPVTHEAAERWLHHMQQALD 120
           +S K++AIQNQYEFFVQRMGGPPL+SQR+GHPALIGRHRPFPVTH+AAERWL HMQ ALD
Sbjct: 61  NSNKEDAIQNQYEFFVQRMGGPPLYSQRKGHPALIGRHRPFPVTHQAAERWLEHMQNALD 120

Query: 121 STPDIDDDSKIKMQNFFRHTAYFLVAGNELKKQNE------QMPCKHAA 163
            + DID DSKIKM  FFRHTA+FLVAGNELK QNE      Q  CKHAA
Sbjct: 121 DSVDIDQDSKIKMMKFFRHTAFFLVAGNELKNQNEKPKHKPQCACKHAA 169