Miyakogusa Predicted Gene

Lj1g3v0948480.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0948480.1 CUFF.26545.1
         (64 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G46330.1 | Symbols: AGP16, ATAGP16 | arabinogalactan protein ...    52   6e-08
AT3G61640.1 | Symbols: AGP20, AtAGP20 | arabinogalactan protein ...    49   6e-07
AT5G53250.1 | Symbols: AGP22, ATAGP22 | arabinogalactan protein ...    46   4e-06

>AT2G46330.1 | Symbols: AGP16, ATAGP16 | arabinogalactan protein
          16 | chr2:19018730-19019108 REVERSE LENGTH=73
          Length = 73

 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 31/48 (64%)

Query: 17 LIYAALMSVACSQSTAPAPAPTSDGTSIDQXXXXXXXXXXXXXTYLIH 64
           ++A ++S+A +QS APAPAPTSDGTSIDQ             TYLIH
Sbjct: 15 FVFAVILSLAGAQSLAPAPAPTSDGTSIDQGIAYLLMVVALVLTYLIH 62


>AT3G61640.1 | Symbols: AGP20, AtAGP20 | arabinogalactan protein
          20 | chr3:22810283-22810629 REVERSE LENGTH=74
          Length = 74

 Score = 48.9 bits (115), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 32/60 (53%)

Query: 5  SGASFRVVVFLGLIYAALMSVACSQSTAPAPAPTSDGTSIDQXXXXXXXXXXXXXTYLIH 64
          S  S  V+     ++A +   A +QS APAP+PTSDGTSIDQ             TYLIH
Sbjct: 3  SRNSVAVIALFAFVFAVISPFAGAQSLAPAPSPTSDGTSIDQGIAYLLMVVALVLTYLIH 62


>AT5G53250.1 | Symbols: AGP22, ATAGP22 | arabinogalactan protein
          22 | chr5:21603715-21604007 FORWARD LENGTH=63
          Length = 63

 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 28/48 (58%)

Query: 17 LIYAALMSVACSQSTAPAPAPTSDGTSIDQXXXXXXXXXXXXXTYLIH 64
          +I   L+ +A S S++PAPAPTSDGTSIDQ             TY IH
Sbjct: 16 IISVILLPIAQSHSSSPAPAPTSDGTSIDQGIAYVLMMVALALTYFIH 63