Miyakogusa Predicted Gene

Lj1g3v0934400.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0934400.1 Non Chatacterized Hit- tr|D3BJ45|D3BJ45_POLPA
Putative uncharacterized protein OS=Polysphondylium
pa,38.98,4e-17,Myosin_TH1,Myosin tail 2; seg,NULL,CUFF.26541.1
         (195 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G53310.1 | Symbols:  | myosin heavy chain-related | chr5:2163...   225   1e-59

>AT5G53310.1 | Symbols:  | myosin heavy chain-related |
           chr5:21634657-21636094 FORWARD LENGTH=210
          Length = 210

 Score =  225 bits (574), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 102/154 (66%), Positives = 131/154 (85%)

Query: 40  KGDHLNVPSHPYLTKILHKQGDQQVLFADKVLKFTGSGKMKTRILLITDFAMYIVDPETD 99
           +GD+L+V S P L +IL KQGD  +LFADKVLKFTGSGKMK RI ++TDFA+Y++DPET+
Sbjct: 55  RGDYLHVSSRPGLMRILEKQGDTSILFADKVLKFTGSGKMKRRIFILTDFAIYLIDPETE 114

Query: 100 SLKRRIALAAVEKICLSKLSDNFLAVIIPTEYDLLIASARKSEIVAAFVEATRKASDYEL 159
           ++ RRIAL++VEK+CLSKLSDNF A+IIPTEYDL +AS RK+E+V   V+ T+ ASDYEL
Sbjct: 115 AMTRRIALSSVEKMCLSKLSDNFFAIIIPTEYDLFMASTRKTELVQVMVDVTKSASDYEL 174

Query: 160 EVVCSNRFEYNAASDLVKEIEFEEVEGGVKTRII 193
           EV+ SNRFEYNA++ LVKE+ FEE EGG+KT+ +
Sbjct: 175 EVLLSNRFEYNASASLVKEVSFEESEGGIKTKFV 208