Miyakogusa Predicted Gene
- Lj1g3v0913120.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v0913120.1 Non Chatacterized Hit- tr|A2ZR97|A2ZR97_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,68.25,6e-19,seg,NULL; FAMILY NOT NAMED,NULL,CUFF.26520.1
(128 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G78780.2 | Symbols: | pathogenesis-related family protein | ... 104 1e-23
AT1G78780.4 | Symbols: | pathogenesis-related family protein | ... 99 6e-22
>AT1G78780.2 | Symbols: | pathogenesis-related family protein |
chr1:29621447-29622431 REVERSE LENGTH=238
Length = 238
Score = 104 bits (260), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 75/113 (66%), Gaps = 3/113 (2%)
Query: 7 EKDKYRTYLHGDQEKNTKWRFGAPPNYEAVNKLFEEGRTKEWPPGSLEEQVQTLVKNWEM 66
E+DKYR+ L + +WR+ PP++ +VN+LFEEG+TK WP GSLEE VQ +K+WEM
Sbjct: 6 ERDKYRSVL--EDAGQVQWRYDNPPDFNSVNQLFEEGQTKVWPEGSLEETVQNAIKSWEM 63
Query: 67 EFFHKVDINDFRSIDPKKFTFSLNGRKPMSXXXXXXXXXXYIPMLQTFLPQKL 119
EF HK+ + DF++I+P+KF +NGR+ +S Y +L+ LP++
Sbjct: 64 EFSHKIRLQDFKTINPEKFKLFVNGREGLS-AEETLRLGSYNALLKNSLPEEF 115
>AT1G78780.4 | Symbols: | pathogenesis-related family protein |
chr1:29621447-29622431 REVERSE LENGTH=235
Length = 235
Score = 99.0 bits (245), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 63/85 (74%), Gaps = 2/85 (2%)
Query: 7 EKDKYRTYLHGDQEKNTKWRFGAPPNYEAVNKLFEEGRTKEWPPGSLEEQVQTLVKNWEM 66
E+DKYR+ L + +WR+ PP++ +VN+LFEEG+TK WP GSLEE VQ +K+WEM
Sbjct: 6 ERDKYRSVL--EDAGQVQWRYDNPPDFNSVNQLFEEGQTKVWPEGSLEETVQNAIKSWEM 63
Query: 67 EFFHKVDINDFRSIDPKKFTFSLNG 91
EF HK+ + DF++I+P+KF +NG
Sbjct: 64 EFSHKIRLQDFKTINPEKFKLFVNG 88