Miyakogusa Predicted Gene

Lj1g3v0913120.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0913120.1 Non Chatacterized Hit- tr|A2ZR97|A2ZR97_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,68.25,6e-19,seg,NULL; FAMILY NOT NAMED,NULL,CUFF.26520.1
         (128 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G78780.2 | Symbols:  | pathogenesis-related family protein | ...   104   1e-23
AT1G78780.4 | Symbols:  | pathogenesis-related family protein | ...    99   6e-22

>AT1G78780.2 | Symbols:  | pathogenesis-related family protein |
           chr1:29621447-29622431 REVERSE LENGTH=238
          Length = 238

 Score =  104 bits (260), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 75/113 (66%), Gaps = 3/113 (2%)

Query: 7   EKDKYRTYLHGDQEKNTKWRFGAPPNYEAVNKLFEEGRTKEWPPGSLEEQVQTLVKNWEM 66
           E+DKYR+ L  +     +WR+  PP++ +VN+LFEEG+TK WP GSLEE VQ  +K+WEM
Sbjct: 6   ERDKYRSVL--EDAGQVQWRYDNPPDFNSVNQLFEEGQTKVWPEGSLEETVQNAIKSWEM 63

Query: 67  EFFHKVDINDFRSIDPKKFTFSLNGRKPMSXXXXXXXXXXYIPMLQTFLPQKL 119
           EF HK+ + DF++I+P+KF   +NGR+ +S          Y  +L+  LP++ 
Sbjct: 64  EFSHKIRLQDFKTINPEKFKLFVNGREGLS-AEETLRLGSYNALLKNSLPEEF 115


>AT1G78780.4 | Symbols:  | pathogenesis-related family protein |
          chr1:29621447-29622431 REVERSE LENGTH=235
          Length = 235

 Score = 99.0 bits (245), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 44/85 (51%), Positives = 63/85 (74%), Gaps = 2/85 (2%)

Query: 7  EKDKYRTYLHGDQEKNTKWRFGAPPNYEAVNKLFEEGRTKEWPPGSLEEQVQTLVKNWEM 66
          E+DKYR+ L  +     +WR+  PP++ +VN+LFEEG+TK WP GSLEE VQ  +K+WEM
Sbjct: 6  ERDKYRSVL--EDAGQVQWRYDNPPDFNSVNQLFEEGQTKVWPEGSLEETVQNAIKSWEM 63

Query: 67 EFFHKVDINDFRSIDPKKFTFSLNG 91
          EF HK+ + DF++I+P+KF   +NG
Sbjct: 64 EFSHKIRLQDFKTINPEKFKLFVNG 88