Miyakogusa Predicted Gene

Lj1g3v0913110.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0913110.1 tr|Q4A185|Q4A185_MEDTR Beclin 1 protein
OS=Medicago truncatula GN=atg6 PE=2 SV=1,81.63,9e-19,
,gene.Ljchr1_pseudomol_20120830.path1.gene2331.1
         (134 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G61710.1 | Symbols: ATATG6, ATG6, BECLIN1, AtBECLIN1 | AUTOPH...    79   1e-15
AT3G61710.2 | Symbols: BECLIN1, AtBECLIN1 | AUTOPHAGY 6 | chr3:2...    76   5e-15

>AT3G61710.1 | Symbols: ATATG6, ATG6, BECLIN1, AtBECLIN1 | AUTOPHAGY
           6 | chr3:22839477-22842253 REVERSE LENGTH=517
          Length = 517

 Score = 78.6 bits (192), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/46 (67%), Positives = 38/46 (82%)

Query: 66  RSRTLPVDLNMPRWVCQNCRNSLCIVGVDSYADKFFNDPSRSTSSG 111
           +SRT+P+D N+P+WVCQNC +SL IVGVDSYA KFFNDP  S + G
Sbjct: 9   KSRTIPIDPNLPKWVCQNCHHSLTIVGVDSYAGKFFNDPPPSATQG 54


>AT3G61710.2 | Symbols: BECLIN1, AtBECLIN1 | AUTOPHAGY 6 |
           chr3:22840211-22842253 REVERSE LENGTH=386
          Length = 386

 Score = 76.3 bits (186), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 31/46 (67%), Positives = 38/46 (82%)

Query: 66  RSRTLPVDLNMPRWVCQNCRNSLCIVGVDSYADKFFNDPSRSTSSG 111
           +SRT+P+D N+P+WVCQNC +SL IVGVDSYA KFFNDP  S + G
Sbjct: 9   KSRTIPIDPNLPKWVCQNCHHSLTIVGVDSYAGKFFNDPPPSATQG 54