Miyakogusa Predicted Gene

Lj1g3v0901970.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0901970.1 Non Chatacterized Hit- tr|B9S2P7|B9S2P7_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,45.32,8e-18,seg,NULL,CUFF.26531.1
         (257 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21390.1 | Symbols: emb2170 | embryo defective 2170 | chr1:74...    65   4e-11
AT1G76980.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...    58   5e-09
AT1G76980.2 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    58   7e-09

>AT1G21390.1 | Symbols: emb2170 | embryo defective 2170 |
           chr1:7489385-7490554 REVERSE LENGTH=248
          Length = 248

 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/96 (44%), Positives = 50/96 (52%), Gaps = 7/96 (7%)

Query: 50  ALSPSSRTEAIVRGQRELMEMVRNMPESNYELSLKDLVEHQHWHDAPQENSXXXXXXXXX 109
           +LSP S+ +AI RGQRELMEMV  MPES YELSLKDLVE +      QEN          
Sbjct: 54  SLSPDSKAQAIARGQRELMEMVSKMPESCYELSLKDLVEVK----VNQENERKVFDELPK 109

Query: 110 XXXXXQGSARKV--DKMAHVKRTGSNIDRGGFYLKV 143
                    RK   DK     R+G   +  GF LK+
Sbjct: 110 RANRQSKVVRKTKSDKRVDPNRSGGG-NNSGFLLKI 144


>AT1G76980.1 | Symbols:  | BEST Arabidopsis thaliana protein match
          is: embryo defective 2170 (TAIR:AT1G21390.1); Has 65
          Blast hits to 65 proteins in 23 species: Archae - 0;
          Bacteria - 8; Metazoa - 1; Fungi - 8; Plants - 40;
          Viruses - 3; Other Eukaryotes - 5 (source: NCBI BLink).
          | chr1:28926466-28927242 REVERSE LENGTH=258
          Length = 258

 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/38 (71%), Positives = 31/38 (81%)

Query: 51 LSPSSRTEAIVRGQRELMEMVRNMPESNYELSLKDLVE 88
          LSP ++ + I RGQRELM+MV  MPES YELSLKDLVE
Sbjct: 53 LSPVTKAQVIARGQRELMDMVSKMPESCYELSLKDLVE 90


>AT1G76980.2 | Symbols:  | FUNCTIONS IN: molecular_function
          unknown; INVOLVED IN: biological_process unknown;
          LOCATED IN: cellular_component unknown; BEST
          Arabidopsis thaliana protein match is: embryo defective
          2170 (TAIR:AT1G21390.1); Has 61 Blast hits to 61
          proteins in 18 species: Archae - 0; Bacteria - 8;
          Metazoa - 8; Fungi - 2; Plants - 40; Viruses - 3; Other
          Eukaryotes - 0 (source: NCBI BLink). |
          chr1:28926086-28927242 REVERSE LENGTH=250
          Length = 250

 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 27/38 (71%), Positives = 31/38 (81%)

Query: 51 LSPSSRTEAIVRGQRELMEMVRNMPESNYELSLKDLVE 88
          LSP ++ + I RGQRELM+MV  MPES YELSLKDLVE
Sbjct: 53 LSPVTKAQVIARGQRELMDMVSKMPESCYELSLKDLVE 90