Miyakogusa Predicted Gene
- Lj1g3v0900960.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v0900960.1 tr|Q43486|Q43486_HORVU B32E protein OS=Hordeum
vulgare GN=B32E PE=2 SV=1,36.2,5e-19,GB DEF: SEED PROTEIN B32E
(FRAGMENT),NULL; VHS DOMAIN CONTAINING PROTEIN FAMILY,NULL; seg,NULL;
GAT,,CUFF.26521.1
(261 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G21380.1 | Symbols: | Target of Myb protein 1 | chr1:7485806... 159 1e-39
AT1G76970.1 | Symbols: | Target of Myb protein 1 | chr1:2892284... 125 3e-29
AT4G32760.1 | Symbols: | ENTH/VHS/GAT family protein | chr4:157... 50 2e-06
AT4G32760.2 | Symbols: | ENTH/VHS/GAT family protein | chr4:157... 50 2e-06
>AT1G21380.1 | Symbols: | Target of Myb protein 1 |
chr1:7485806-7488032 REVERSE LENGTH=506
Length = 506
Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 113/271 (41%), Positives = 151/271 (55%), Gaps = 40/271 (14%)
Query: 1 MLLVNNTTDEELLSQGLALNDSLQRELDRHDDIAKGTANSGAREADLPLVNVNH--EDDE 58
M LVN T+DEEL+ QGLALND+LQR L HDD AKG + +PLV++NH +DDE
Sbjct: 234 MALVNTTSDEELMCQGLALNDNLQRVLQHHDDKAKGNSVPATAPTPIPLVSINHDDDDDE 293
Query: 59 SEDDFAQLAPRSSRDTNAQNRKPAYDEAESGRVNSFSPPPPASRKPVYSGTGAVDYLSGD 118
S+DDF QLA RS R++ + G N PPPP+S +PV+ +GA+D+LSGD
Sbjct: 294 SDDDFLQLAHRSKRESARGTGQ--------GNFNPILPPPPSSMRPVHVDSGAMDFLSGD 345
Query: 119 AYKAEGSRENSEPTSLAVPLDSSLNPTASLIFNKQPVYDEPSPMNKSSEH---------- 168
YK + + EN +P S + S N S P++DEP P +KS EH
Sbjct: 346 VYKPQETFENVKPPSTS----QSSNHDYS-----APIFDEPVPQSKSPEHALFTKPVYDQ 396
Query: 169 ---LPPAPWDTXX-XXXXXXXXXKHNQRQQFFEQHXXXXXXXXXXXXXXXLVGQTQNLSL 224
LPPAPW+T + N+R ++F+ + L+GQ++NLSL
Sbjct: 397 TEQLPPAPWETQEPRKYPPSMSARTNKRPEYFQHNVPQHSSSASESSYDDLLGQSRNLSL 456
Query: 225 NSS------TPPKQ-QKPEDALFKDLVDFAK 248
N + TPPK+ KPED LFKDL+DFAK
Sbjct: 457 NPTASAAPVTPPKKDDKPEDILFKDLMDFAK 487
>AT1G76970.1 | Symbols: | Target of Myb protein 1 |
chr1:28922841-28924854 REVERSE LENGTH=446
Length = 446
Score = 125 bits (313), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 112/260 (43%), Positives = 136/260 (52%), Gaps = 64/260 (24%)
Query: 1 MLLVNNTTDEELLSQGLALNDSLQRELDRHDDIAK-GTANSGAREADLP----LVNVNH- 54
M LVN TTDEELL QGLALND+LQ L RHDDIA G+ S R P +V++NH
Sbjct: 226 MTLVNTTTDEELLCQGLALNDNLQHVLQRHDDIANVGSVPSNGRNTRAPPPVQIVDINHD 285
Query: 55 -EDDESEDDFAQLAPRSSRDTNAQNRKPAYDEAESGRVNSFSPPPPASRKPVY-SGTGAV 112
EDDES+D+FA+LA RSS T R+PV+ S +G V
Sbjct: 286 DEDDESDDEFARLAHRSSTPT---------------------------RRPVHGSDSGMV 318
Query: 113 DYLSGDAYKAEGSRENSEPTSLAVPLDSSLNPTASLIFNKQPVYDEPSP-MNKSSE---H 168
D LSGD YK +G NS + P + + PV+D+ SP +KSSE +
Sbjct: 319 DILSGDVYKPQG---NSSSQGVK---KPPPPPPHTSSSSSSPVFDDASPQQSKSSEVIRN 372
Query: 169 LPPAPWDTXXXXXXXXXXXKHNQRQQFFEQHXXXXXXXXXXXXXXXLVGQTQNLSLNSST 228
LPP P +HNQRQQFFE H GQT+NLSL SS
Sbjct: 373 LPPPP-------------SRHNQRQQFFEHHHSSSGSDSSYE------GQTRNLSLTSSE 413
Query: 229 PPKQQKPEDALFKDLVDFAK 248
P K++KPED LFKDLV+FAK
Sbjct: 414 PQKEEKPEDLLFKDLVEFAK 433
>AT4G32760.1 | Symbols: | ENTH/VHS/GAT family protein |
chr4:15799376-15803832 FORWARD LENGTH=675
Length = 675
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 61/124 (49%), Gaps = 25/124 (20%)
Query: 3 LVNNTTDEELLSQGLALNDSLQRELDRHDDIAKGTANSGAR------EADLPLVNVNHED 56
LVN+T+DE LL QGLALND LQR L ++ IA G + ++ E LV+V+
Sbjct: 236 LVNSTSDESLLCQGLALNDDLQRVLTNYEAIASGLPGTSSQIEKPKSETGKSLVDVDGPL 295
Query: 57 DESEDDFAQLAPRSSRDTNAQNRKPAYDEAESGRVNSFSPPPPASRKPVYSGTG--AVDY 114
++ D SS N A + +G +N + P P PV +G+ +D
Sbjct: 296 IDTGD--------SSNQANG-----ATSSSGNGVLNQLALPAP----PVTNGSANSKIDL 338
Query: 115 LSGD 118
LSGD
Sbjct: 339 LSGD 342
>AT4G32760.2 | Symbols: | ENTH/VHS/GAT family protein |
chr4:15799376-15803832 FORWARD LENGTH=676
Length = 676
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 61/124 (49%), Gaps = 25/124 (20%)
Query: 3 LVNNTTDEELLSQGLALNDSLQRELDRHDDIAKGTANSGAR------EADLPLVNVNHED 56
LVN+T+DE LL QGLALND LQR L ++ IA G + ++ E LV+V+
Sbjct: 236 LVNSTSDESLLCQGLALNDDLQRVLTNYEAIASGLPGTSSQIEKPKSETGKSLVDVDGPL 295
Query: 57 DESEDDFAQLAPRSSRDTNAQNRKPAYDEAESGRVNSFSPPPPASRKPVYSGTG--AVDY 114
++ D SS N A + +G +N + P P PV +G+ +D
Sbjct: 296 IDTGD--------SSNQANG-----ATSSSGNGVLNQLALPAP----PVTNGSANSKIDL 338
Query: 115 LSGD 118
LSGD
Sbjct: 339 LSGD 342