Miyakogusa Predicted Gene

Lj1g3v0900960.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0900960.1 tr|Q43486|Q43486_HORVU B32E protein OS=Hordeum
vulgare GN=B32E PE=2 SV=1,36.2,5e-19,GB DEF: SEED PROTEIN B32E
(FRAGMENT),NULL; VHS DOMAIN CONTAINING PROTEIN FAMILY,NULL; seg,NULL;
GAT,,CUFF.26521.1
         (261 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21380.1 | Symbols:  | Target of Myb protein 1 | chr1:7485806...   159   1e-39
AT1G76970.1 | Symbols:  | Target of Myb protein 1 | chr1:2892284...   125   3e-29
AT4G32760.1 | Symbols:  | ENTH/VHS/GAT family protein | chr4:157...    50   2e-06
AT4G32760.2 | Symbols:  | ENTH/VHS/GAT family protein | chr4:157...    50   2e-06

>AT1G21380.1 | Symbols:  | Target of Myb protein 1 |
           chr1:7485806-7488032 REVERSE LENGTH=506
          Length = 506

 Score =  159 bits (403), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 113/271 (41%), Positives = 151/271 (55%), Gaps = 40/271 (14%)

Query: 1   MLLVNNTTDEELLSQGLALNDSLQRELDRHDDIAKGTANSGAREADLPLVNVNH--EDDE 58
           M LVN T+DEEL+ QGLALND+LQR L  HDD AKG +        +PLV++NH  +DDE
Sbjct: 234 MALVNTTSDEELMCQGLALNDNLQRVLQHHDDKAKGNSVPATAPTPIPLVSINHDDDDDE 293

Query: 59  SEDDFAQLAPRSSRDTNAQNRKPAYDEAESGRVNSFSPPPPASRKPVYSGTGAVDYLSGD 118
           S+DDF QLA RS R++     +        G  N   PPPP+S +PV+  +GA+D+LSGD
Sbjct: 294 SDDDFLQLAHRSKRESARGTGQ--------GNFNPILPPPPSSMRPVHVDSGAMDFLSGD 345

Query: 119 AYKAEGSRENSEPTSLAVPLDSSLNPTASLIFNKQPVYDEPSPMNKSSEH---------- 168
            YK + + EN +P S +     S N   S      P++DEP P +KS EH          
Sbjct: 346 VYKPQETFENVKPPSTS----QSSNHDYS-----APIFDEPVPQSKSPEHALFTKPVYDQ 396

Query: 169 ---LPPAPWDTXX-XXXXXXXXXKHNQRQQFFEQHXXXXXXXXXXXXXXXLVGQTQNLSL 224
              LPPAPW+T            + N+R ++F+ +               L+GQ++NLSL
Sbjct: 397 TEQLPPAPWETQEPRKYPPSMSARTNKRPEYFQHNVPQHSSSASESSYDDLLGQSRNLSL 456

Query: 225 NSS------TPPKQ-QKPEDALFKDLVDFAK 248
           N +      TPPK+  KPED LFKDL+DFAK
Sbjct: 457 NPTASAAPVTPPKKDDKPEDILFKDLMDFAK 487


>AT1G76970.1 | Symbols:  | Target of Myb protein 1 |
           chr1:28922841-28924854 REVERSE LENGTH=446
          Length = 446

 Score =  125 bits (313), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 112/260 (43%), Positives = 136/260 (52%), Gaps = 64/260 (24%)

Query: 1   MLLVNNTTDEELLSQGLALNDSLQRELDRHDDIAK-GTANSGAREADLP----LVNVNH- 54
           M LVN TTDEELL QGLALND+LQ  L RHDDIA  G+  S  R    P    +V++NH 
Sbjct: 226 MTLVNTTTDEELLCQGLALNDNLQHVLQRHDDIANVGSVPSNGRNTRAPPPVQIVDINHD 285

Query: 55  -EDDESEDDFAQLAPRSSRDTNAQNRKPAYDEAESGRVNSFSPPPPASRKPVY-SGTGAV 112
            EDDES+D+FA+LA RSS  T                           R+PV+ S +G V
Sbjct: 286 DEDDESDDEFARLAHRSSTPT---------------------------RRPVHGSDSGMV 318

Query: 113 DYLSGDAYKAEGSRENSEPTSLAVPLDSSLNPTASLIFNKQPVYDEPSP-MNKSSE---H 168
           D LSGD YK +G   NS    +         P  +   +  PV+D+ SP  +KSSE   +
Sbjct: 319 DILSGDVYKPQG---NSSSQGVK---KPPPPPPHTSSSSSSPVFDDASPQQSKSSEVIRN 372

Query: 169 LPPAPWDTXXXXXXXXXXXKHNQRQQFFEQHXXXXXXXXXXXXXXXLVGQTQNLSLNSST 228
           LPP P              +HNQRQQFFE H                 GQT+NLSL SS 
Sbjct: 373 LPPPP-------------SRHNQRQQFFEHHHSSSGSDSSYE------GQTRNLSLTSSE 413

Query: 229 PPKQQKPEDALFKDLVDFAK 248
           P K++KPED LFKDLV+FAK
Sbjct: 414 PQKEEKPEDLLFKDLVEFAK 433


>AT4G32760.1 | Symbols:  | ENTH/VHS/GAT family protein |
           chr4:15799376-15803832 FORWARD LENGTH=675
          Length = 675

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 61/124 (49%), Gaps = 25/124 (20%)

Query: 3   LVNNTTDEELLSQGLALNDSLQRELDRHDDIAKGTANSGAR------EADLPLVNVNHED 56
           LVN+T+DE LL QGLALND LQR L  ++ IA G   + ++      E    LV+V+   
Sbjct: 236 LVNSTSDESLLCQGLALNDDLQRVLTNYEAIASGLPGTSSQIEKPKSETGKSLVDVDGPL 295

Query: 57  DESEDDFAQLAPRSSRDTNAQNRKPAYDEAESGRVNSFSPPPPASRKPVYSGTG--AVDY 114
            ++ D        SS   N      A   + +G +N  + P P    PV +G+    +D 
Sbjct: 296 IDTGD--------SSNQANG-----ATSSSGNGVLNQLALPAP----PVTNGSANSKIDL 338

Query: 115 LSGD 118
           LSGD
Sbjct: 339 LSGD 342


>AT4G32760.2 | Symbols:  | ENTH/VHS/GAT family protein |
           chr4:15799376-15803832 FORWARD LENGTH=676
          Length = 676

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 61/124 (49%), Gaps = 25/124 (20%)

Query: 3   LVNNTTDEELLSQGLALNDSLQRELDRHDDIAKGTANSGAR------EADLPLVNVNHED 56
           LVN+T+DE LL QGLALND LQR L  ++ IA G   + ++      E    LV+V+   
Sbjct: 236 LVNSTSDESLLCQGLALNDDLQRVLTNYEAIASGLPGTSSQIEKPKSETGKSLVDVDGPL 295

Query: 57  DESEDDFAQLAPRSSRDTNAQNRKPAYDEAESGRVNSFSPPPPASRKPVYSGTG--AVDY 114
            ++ D        SS   N      A   + +G +N  + P P    PV +G+    +D 
Sbjct: 296 IDTGD--------SSNQANG-----ATSSSGNGVLNQLALPAP----PVTNGSANSKIDL 338

Query: 115 LSGD 118
           LSGD
Sbjct: 339 LSGD 342