Miyakogusa Predicted Gene
- Lj1g3v0900940.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v0900940.1 Non Chatacterized Hit- tr|F6HUJ2|F6HUJ2_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,36.31,1e-18,Staygreen,Staygreen protein; FAMILY NOT NAMED,NULL;
seg,NULL,CUFF.26503.1
(252 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G44000.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 271 4e-73
AT4G11910.1 | Symbols: | INVOLVED IN: biological_process unknow... 181 3e-46
AT4G22920.1 | Symbols: ATNYE1, NYE1 | non-yellowing 1 | chr4:120... 176 1e-44
AT4G11911.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 160 1e-39
>AT1G44000.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G11911.1); Has 216 Blast hits to 212 proteins
in 76 species: Archae - 0; Bacteria - 96; Metazoa - 0;
Fungi - 0; Plants - 118; Viruses - 0; Other Eukaryotes -
2 (source: NCBI BLink). | chr1:16708201-16709521 REVERSE
LENGTH=260
Length = 260
Score = 271 bits (692), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 137/216 (63%), Positives = 165/216 (76%), Gaps = 6/216 (2%)
Query: 41 SSINNSTPSYNTLVSEAVRLLVPPAKFEASKLKVV----LLEDQMNKYASIIPRTYILSH 96
S+I++ SYNTLVSEAVRLLVP A F++SKLKV LLE++ N I PRTYILSH
Sbjct: 47 SAISDGGVSYNTLVSEAVRLLVPQANFDSSKLKVEFLGELLENKSNG-GIITPRTYILSH 105
Query: 97 CDLTANLTLAVSNVIKLEQLRGWYEKDDVVAEWKKVKNEMCLHVHCFVSGPNPFLDLAAE 156
CD TANLTL +SNVI L+QL GWY+KDDVVAEWKKV +E+ LH+HC VSG + D+AAE
Sbjct: 106 CDFTANLTLTISNVINLDQLEGWYKKDDVVAEWKKVNDELRLHIHCCVSGMSLLQDVAAE 165
Query: 157 FRYHIFSKEMPLVLKAIQYGDSVLFHEHPELLDSIVRIYFHSSSKKYNRMECWGPLKDAM 216
RYHIFSKE+PLVLKA+ +GDSV+F E+PEL+D+ V +YFHSS+ KYNR+ECWGPLKDA
Sbjct: 166 LRYHIFSKELPLVLKAVVHGDSVMFRENPELMDAYVWVYFHSSTPKYNRIECWGPLKDAA 225
Query: 217 EGKQADQIQGLISRDCPPEKCRSPKSIFQALFAFLL 252
+GKQ QG +S + R KSIF LF FLL
Sbjct: 226 KGKQQGNHQGFLSSTTSRKLIRH-KSIFHTLFTFLL 260
>AT4G11910.1 | Symbols: | INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; BEST Arabidopsis thaliana
protein match is: non-yellowing 1 (TAIR:AT4G22920.1);
Has 206 Blast hits to 202 proteins in 67 species: Archae
- 0; Bacteria - 86; Metazoa - 0; Fungi - 0; Plants -
118; Viruses - 0; Other Eukaryotes - 2 (source: NCBI
BLink). | chr4:7156435-7157839 FORWARD LENGTH=271
Length = 271
Score = 181 bits (460), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 94/188 (50%), Positives = 124/188 (65%), Gaps = 7/188 (3%)
Query: 58 VRLLVPPAKFEASKLKVVLLEDQMNKYASIIPRTYILSHCDLTANLTLAVSNVIKLEQLR 117
V L PA FEASKLKV+ L K+ + +PRTY L+H D+TA LTLA+S I QL+
Sbjct: 44 VARLFGPAIFEASKLKVLFLGVDEKKHPAKLPRTYTLTHSDITAKLTLAISQSINNSQLQ 103
Query: 118 GWYEK---DDVVAEWKKVKNEMCLHVHCFVSGPNPFLDLAAEFRYHIFSKEMPLVLKAIQ 174
GW K D+VV EWKKVK +M LHVHC +SG + FL+L A+ RY+IF KE+P+VL+A
Sbjct: 104 GWANKLFRDEVVGEWKKVKGKMSLHVHCHISGGHFFLNLIAKLRYYIFCKELPVVLEAFA 163
Query: 175 YGDSVLFHEHPELLDSIVRIYFHSSSKKYNRMECWGPLKDAMEGKQADQIQGLISRDCP- 233
+GD L + HPEL +S V +YFHS+ +YN++ECWGPL +AM Q D S P
Sbjct: 164 HGDEYLLNNHPELQESPVWVYFHSNIPEYNKVECWGPLWEAMSQHQHDGRTHKKSETLPE 223
Query: 234 ---PEKCR 238
P++C+
Sbjct: 224 LPCPDECK 231
>AT4G22920.1 | Symbols: ATNYE1, NYE1 | non-yellowing 1 |
chr4:12016776-12017969 REVERSE LENGTH=268
Length = 268
Score = 176 bits (447), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 86/162 (53%), Positives = 116/162 (71%), Gaps = 3/162 (1%)
Query: 58 VRLLVPPAKFEASKLKVVLLEDQMNKYASIIPRTYILSHCDLTANLTLAVSNVIKLEQLR 117
V L PA FE+SKLKV+ L K+ S +PRTY L+H D+TA LTLA+S I QL+
Sbjct: 48 VARLFGPAIFESSKLKVLFLGVDEKKHPSTLPRTYTLTHSDITAKLTLAISQSINNSQLQ 107
Query: 118 GWYEK---DDVVAEWKKVKNEMCLHVHCFVSGPNPFLDLAAEFRYHIFSKEMPLVLKAIQ 174
GW + D+VVAEWKKVK +M LHVHC +SG + LDL A+FRY IF KE+P+VLKA
Sbjct: 108 GWANRLYRDEVVAEWKKVKGKMSLHVHCHISGGHFLLDLFAKFRYFIFCKELPVVLKAFV 167
Query: 175 YGDSVLFHEHPELLDSIVRIYFHSSSKKYNRMECWGPLKDAM 216
+GD L + +PEL +++V +YFHS+ ++N++ECWGPL +A+
Sbjct: 168 HGDGNLLNNYPELQEALVWVYFHSNVNEFNKVECWGPLWEAV 209
>AT4G11911.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT4G11910.1); Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr4:7158150-7159440 FORWARD LENGTH=273
Length = 273
Score = 160 bits (404), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/161 (50%), Positives = 108/161 (67%), Gaps = 3/161 (1%)
Query: 58 VRLLVPPAKFEASKLKVVLLEDQMNKYASIIPRTYILSHCDLTANLTLAVSNVIKLEQLR 117
V L A FEASKL V L K+ +PRTY +H D+TA LTLA+S+ I QL+
Sbjct: 44 VARLFGQAIFEASKLNVKFLGVDEKKHPPNLPRTYTFTHSDITAKLTLAISHSINNSQLQ 103
Query: 118 GWYEK---DDVVAEWKKVKNEMCLHVHCFVSGPNPFLDLAAEFRYHIFSKEMPLVLKAIQ 174
GW + D+VVAEW+KVK+ M LHVHC +SG + LDL AE RY IF KE+P+VLKA
Sbjct: 104 GWANRLYRDEVVAEWRKVKSNMSLHVHCHISGDHFLLDLIAELRYFIFCKELPMVLKAFV 163
Query: 175 YGDSVLFHEHPELLDSIVRIYFHSSSKKYNRMECWGPLKDA 215
+GD + + +PEL ++ V +YFHS+ K+N++ECWG L +A
Sbjct: 164 HGDENMLNNYPELHEAFVWVYFHSNIPKFNKVECWGRLCEA 204