Miyakogusa Predicted Gene

Lj1g3v0897620.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0897620.1 tr|Q063L2|Q063L2_9SYNE NAD(P)H-quinone
oxidoreductase subunit M OS=Synechococcus sp. BL107 GN=ndhM
P,46.3,4e-19,seg,NULL; coiled-coil,NULL; NdhM,NAD(P)H-quinone
oxidoreductase subunit M,CUFF.26474.1
         (216 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G37925.1 | Symbols: NDH-M | subunit NDH-M of NAD(P)H:plastoqu...   234   3e-62

>AT4G37925.1 | Symbols: NDH-M | subunit NDH-M of
           NAD(P)H:plastoquinone dehydrogenase complex |
           chr4:17830748-17831485 REVERSE LENGTH=217
          Length = 217

 Score =  234 bits (598), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 115/206 (55%), Positives = 145/206 (70%), Gaps = 6/206 (2%)

Query: 1   MATSCSYMVSTKLSMLGWTGGGRTGLKN-KRAFFISAQQQTTDVXXXXXXXXXXXXXXXX 59
           M  + SY   TKLS+L  +   +   +  ++AF ++  +Q + +                
Sbjct: 1   MVAAFSYTACTKLSLLHPSMVAQIRPRTTQKAFVVTNPEQDSTLEVQETETLKEEQSTEK 60

Query: 60  XXXXMNPKGVKPRPAETQINVKSKNMSREYGGQWLSTATRHVRIYAAYIDPETWEFDQTQ 119
                 P     RP E Q+NVKSK M  ++GGQWLS+ TRHVRIYAAYIDPET EFDQ+Q
Sbjct: 61  MKKQPTPL----RPVEKQLNVKSKGMG-DFGGQWLSSVTRHVRIYAAYIDPETCEFDQSQ 115

Query: 120 MDKLTLLLDPQDEFVWNPETCNMVFSYFQELVDHYEGSQLTEYTLRLIGSDIEHYIRKLL 179
           MDKLTL+LDP +EFVW+ E+CN V+SYFQELVDHYEG+ LTEYTLRLIGSD+EHYIRK+L
Sbjct: 116 MDKLTLILDPTEEFVWDDESCNKVYSYFQELVDHYEGAPLTEYTLRLIGSDVEHYIRKML 175

Query: 180 YDGKLKYNMNARVLNFSMGKPRVMLN 205
           +DG+++YNM+ARVLNFSMGKPRV  N
Sbjct: 176 FDGEIQYNMDARVLNFSMGKPRVQFN 201