Miyakogusa Predicted Gene

Lj1g3v0885530.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0885530.2 Non Chatacterized Hit- tr|I1IN92|I1IN92_BRADI
Uncharacterized protein (Fragment) OS=Brachypodium
dis,59.68,0.00000000000006,seg,NULL,CUFF.26585.2
         (328 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21600.2 | Symbols: PTAC6 | plastid transcriptionally active ...   399   e-111
AT1G21600.1 | Symbols: PTAC6 | plastid transcriptionally active ...   399   e-111

>AT1G21600.2 | Symbols: PTAC6 | plastid transcriptionally active 6 |
           chr1:7571514-7573782 REVERSE LENGTH=328
          Length = 328

 Score =  399 bits (1024), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 198/249 (79%), Positives = 219/249 (87%), Gaps = 7/249 (2%)

Query: 87  NKRDFDIEYEP-------SGSGADLDIAVAESKSFVSTQGWDPETVVDYRINEDEFHKFS 139
           NK+D+D+EY+P       +G G D DIA  +SKSF+STQGWD + VVDYRINEDEFHK S
Sbjct: 80  NKKDYDVEYDPLAAAIAAAGGGGDGDIAFVQSKSFISTQGWDSDMVVDYRINEDEFHKLS 139

Query: 140 LLDCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYSIPKVLAPMPQKYIRCAQSDFGCDNV 199
           L+DCDFFIRKPPDPDNDVYDFREMYVTPPDTD+YSIP+VLAPMPQKYIRCA SD+GC NV
Sbjct: 140 LMDCDFFIRKPPDPDNDVYDFREMYVTPPDTDIYSIPRVLAPMPQKYIRCAMSDYGCYNV 199

Query: 200 TEPPVDALRDPLYKSEREIYKIFLTKHYKNRRLGDPEFVLDFEEIYVIDSKTKSITRAKV 259
           TEPP+DA RDPLYKSEREI K+FLTKHY+NRR  DPEFVLD EEIYVIDSKTKSITRA+V
Sbjct: 200 TEPPIDAPRDPLYKSEREISKVFLTKHYRNRRTNDPEFVLDLEEIYVIDSKTKSITRARV 259

Query: 260 LVTVPGGRTRDRKSDLLVIADKGRSFKIIHASERDDPTTVIERKEWIETREEMERHLRKL 319
           LVTVPGGR RDRK DLLVI D G SFKIIH  ERDDPTTVIER+EW +TRE+ME+HLRKL
Sbjct: 260 LVTVPGGRKRDRKDDLLVIRDNGTSFKIIHVGERDDPTTVIEREEWTKTREDMEKHLRKL 319

Query: 320 RDFSISNWF 328
           RDFS+SNWF
Sbjct: 320 RDFSVSNWF 328


>AT1G21600.1 | Symbols: PTAC6 | plastid transcriptionally active 6 |
           chr1:7571514-7573782 REVERSE LENGTH=328
          Length = 328

 Score =  399 bits (1024), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 198/249 (79%), Positives = 219/249 (87%), Gaps = 7/249 (2%)

Query: 87  NKRDFDIEYEP-------SGSGADLDIAVAESKSFVSTQGWDPETVVDYRINEDEFHKFS 139
           NK+D+D+EY+P       +G G D DIA  +SKSF+STQGWD + VVDYRINEDEFHK S
Sbjct: 80  NKKDYDVEYDPLAAAIAAAGGGGDGDIAFVQSKSFISTQGWDSDMVVDYRINEDEFHKLS 139

Query: 140 LLDCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYSIPKVLAPMPQKYIRCAQSDFGCDNV 199
           L+DCDFFIRKPPDPDNDVYDFREMYVTPPDTD+YSIP+VLAPMPQKYIRCA SD+GC NV
Sbjct: 140 LMDCDFFIRKPPDPDNDVYDFREMYVTPPDTDIYSIPRVLAPMPQKYIRCAMSDYGCYNV 199

Query: 200 TEPPVDALRDPLYKSEREIYKIFLTKHYKNRRLGDPEFVLDFEEIYVIDSKTKSITRAKV 259
           TEPP+DA RDPLYKSEREI K+FLTKHY+NRR  DPEFVLD EEIYVIDSKTKSITRA+V
Sbjct: 200 TEPPIDAPRDPLYKSEREISKVFLTKHYRNRRTNDPEFVLDLEEIYVIDSKTKSITRARV 259

Query: 260 LVTVPGGRTRDRKSDLLVIADKGRSFKIIHASERDDPTTVIERKEWIETREEMERHLRKL 319
           LVTVPGGR RDRK DLLVI D G SFKIIH  ERDDPTTVIER+EW +TRE+ME+HLRKL
Sbjct: 260 LVTVPGGRKRDRKDDLLVIRDNGTSFKIIHVGERDDPTTVIEREEWTKTREDMEKHLRKL 319

Query: 320 RDFSISNWF 328
           RDFS+SNWF
Sbjct: 320 RDFSVSNWF 328