Miyakogusa Predicted Gene

Lj1g3v0874370.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0874370.1 CUFF.26458.1
         (125 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G77350.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   120   2e-28
AT1G77350.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   120   2e-28

>AT1G77350.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; EXPRESSED IN: 23 plant structures; EXPRESSED
           DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
           Protein of unknown function KRTCAP2
           (InterPro:IPR018614); Has 35333 Blast hits to 34131
           proteins in 2444 species: Archae - 798; Bacteria -
           22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
           - 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
           chr1:29070497-29071545 FORWARD LENGTH=122
          Length = 122

 Score =  120 bits (301), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/122 (51%), Positives = 79/122 (64%), Gaps = 1/122 (0%)

Query: 1   MAGS-GSSMLYSFLLFTVILSLQEMYRGKLASSELYTXXXXXXXXXXXXXXXXXXXNFQE 59
           MAG+ G+SML S ++FTVILSLQE+YRGKLASSEL+T                   NFQE
Sbjct: 1   MAGAVGTSMLGSLIVFTVILSLQEIYRGKLASSELFTILGGFTSSLLFLFSLTFIGNFQE 60

Query: 60  TTGTRTGWGXXXXXXXXXXXXXGTVHRVCITTCFLFSAVLLYEVNKLSSSALTPIDSRTK 119
           ++G ++GWG             GTVHRVCITTCFLFSA LLYEVNK+S   L+  +S++K
Sbjct: 61  SSGIKSGWGAVILAEIIALIAAGTVHRVCITTCFLFSAGLLYEVNKISGYMLSKTESKSK 120

Query: 120 KQ 121
           + 
Sbjct: 121 RH 122


>AT1G77350.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; EXPRESSED IN: 23 plant structures; EXPRESSED
           DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
           Protein of unknown function KRTCAP2
           (InterPro:IPR018614); Has 141 Blast hits to 141 proteins
           in 57 species: Archae - 0; Bacteria - 0; Metazoa - 96;
           Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes -
           12 (source: NCBI BLink). | chr1:29070497-29071545
           FORWARD LENGTH=122
          Length = 122

 Score =  120 bits (301), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/122 (51%), Positives = 79/122 (64%), Gaps = 1/122 (0%)

Query: 1   MAGS-GSSMLYSFLLFTVILSLQEMYRGKLASSELYTXXXXXXXXXXXXXXXXXXXNFQE 59
           MAG+ G+SML S ++FTVILSLQE+YRGKLASSEL+T                   NFQE
Sbjct: 1   MAGAVGTSMLGSLIVFTVILSLQEIYRGKLASSELFTILGGFTSSLLFLFSLTFIGNFQE 60

Query: 60  TTGTRTGWGXXXXXXXXXXXXXGTVHRVCITTCFLFSAVLLYEVNKLSSSALTPIDSRTK 119
           ++G ++GWG             GTVHRVCITTCFLFSA LLYEVNK+S   L+  +S++K
Sbjct: 61  SSGIKSGWGAVILAEIIALIAAGTVHRVCITTCFLFSAGLLYEVNKISGYMLSKTESKSK 120

Query: 120 KQ 121
           + 
Sbjct: 121 RH 122